23b422f758
docs(ssa): Add SSA-Pro vision design - ideal intelligent statistical analysis system with 5 core capabilities
...
Co-authored-by: Cursor <cursoragent@cursor.com >
2026-02-20 15:10:12 +08:00
a792b2e4be
docs(ssa): Update task list - Phase 1 progress 96%, add V11 UI tasks and daily standup 2026-02-20
...
Co-authored-by: Cursor <cursoragent@cursor.com >
2026-02-20 14:51:06 +08:00
8d496d1515
feat(ssa): Complete V11 UI development and frontend-backend integration - Pixel-perfect V11 UI, multi-task support, Word export, input overlay fix, code cleanup. MVP Phase 1 core 95% complete.
...
Co-authored-by: Cursor <cursoragent@cursor.com >
2026-02-20 14:46:45 +08:00
49b5c37cb1
feat(ssa): Complete T-test end-to-end testing with 9 bug fixes - Phase 1 core 85% complete. R service: missing value auto-filter. Backend: error handling, variable matching, dynamic filename. Frontend: module activation, session isolation, error propagation. Full flow verified.
...
Co-authored-by: Cursor <cursoragent@cursor.com >
2026-02-19 20:57:00 +08:00
8137e3cde2
feat(ssa): Complete SSA-Pro MVP development plan v1.3
...
Summary:
- Add PRD and architecture design V4 (Brain-Hand model)
- Complete 5 development guide documents
- Pass 3 rounds of team review (v1.0 -> v1.3)
- Add module status guide document
- Update system status document
Key Features:
- Brain-Hand architecture: Node.js + R Docker
- Statistical guardrails with auto degradation
- HITL workflow: PlanCard -> ExecutionTrace -> ResultCard
- Mixed data protocol: inline vs OSS
- Reproducible R code delivery
MVP Scope: 10 statistical tools
Status: Design 100%, ready for development
Co-authored-by: Cursor <cursoragent@cursor.com >
2026-02-18 21:58:37 +08:00
f9ed0c2528
feat(rvw): Complete V2.0 Week 3 - Statistical validation extension and UX improvements
...
Week 3 Development Summary:
- Implement negative sign normalization (6 Unicode variants)
- Enhance T-test validation with smart sample size extraction
- Enhance SE triangle and CI-P consistency validation with subrow support
- Add precise sub-cell highlighting for P-values in multi-line cells
- Add frontend issue type Chinese translations (6 new types)
- Add file format tips for PDF/DOC uploads
Technical improvements:
- Add _clean_statistical_text() in extractor.py
- Add _safe_float() wrapper in validator.py
- Add ForensicsReport.tsx component
- Update ISSUE_TYPE_LABELS translations
Documentation:
- Add 2026-02-18 development record
- Update RVW module status (v5.1)
- Update system status (v5.2)
Status: Week 3 complete, ready for Week 4 testing
Co-authored-by: Cursor <cursoragent@cursor.com >
2026-02-18 18:26:16 +08:00
9f256c4a02
feat(rvw): implement Skills architecture (Day 7-10)
...
- Add Skills core framework (types, registry, executor, profile, context)
- Implement DataForensicsSkill with DI, path security, graceful degradation
- Implement EditorialSkill and MethodologySkill wrapping existing services
- Extend ExtractionClient with IExtractionClient interface and analyzeDocx
- Refactor reviewWorker to support V1/V2 architecture switching
- Add Zod config validation and generic type support
- Update development docs and module status
Day 7: Skills core framework (~700 lines)
Day 8: DataForensicsSkill + ExtractionClient extension (~400 lines)
Day 9: EditorialSkill + MethodologySkill (~350 lines)
Day 10: ReviewWorker integration (~280 lines)
Co-authored-by: Cursor <cursoragent@cursor.com >
2026-02-18 10:09:40 +08:00
e785969e54
feat(rvw): Implement RVW V2.0 Data Forensics Module - Day 6 StatValidator
...
Summary:
- Implement L2 Statistical Validator (CI-P consistency, T-test reverse)
- Implement L2.5 Consistency Forensics (SE Triangle, SD>Mean check)
- Add error/warning severity classification with tolerance thresholds
- Support 5+ CI formats parsing (parentheses, brackets, 95% CI prefix)
- Complete Python forensics service (types, config, validator, extractor)
V2.0 Development Progress (Week 2 Day 6):
- Day 1-5: Python service setup, Word table extraction, L1 arithmetic validator
- Day 6: L2 StatValidator + L2.5 consistency forensics (promoted from V2.1)
Test Results:
- Unit tests: 4/4 passed (CI-P, SE Triangle, SD>Mean, T-test)
- Real document tests: 5/5 successful, 2 reasonable WARNINGs
Status: Day 6 completed, ready for Day 7 (Skills Framework)
Co-authored-by: Cursor <cursoragent@cursor.com >
2026-02-17 22:15:27 +08:00
7a299e8562
feat(iit): Implement event-level QC architecture V3.1 with dynamic rule filtering, report deduplication and AI intent enhancement
...
Co-authored-by: Cursor <cursoragent@cursor.com >
2026-02-08 21:22:11 +08:00
45c7b32dbb
docs(iit): Add QC system UI and LLM format optimization plan
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- Add development plan: 07-QC system UI and LLM format optimization
- Phase 1: PromptBuilder + XML clinical slice format (~5.5h)
- Phase 2: QC cockpit + stat cards + risk heatmap (~9.5h)
- Phase 3: Variable tagging system (~5h)
- Add CRA Agent design document and prototype
- Update module status: design 100%, code 45%
- Update system status: real-time QC complete + plan ready
Co-authored-by: Cursor <cursoragent@cursor.com >
2026-02-08 09:59:44 +08:00
5db4a7064c
feat(iit): Implement real-time quality control system
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Summary:
- Add 4 new database tables: iit_field_metadata, iit_qc_logs, iit_record_summary, iit_qc_project_stats
- Implement pg-boss debounce mechanism in WebhookController
- Refactor QC Worker for dual output: QC logs + record summary
- Enhance HardRuleEngine to support form-based rule filtering
- Create QcService for QC data queries
- Optimize ChatService with new intents: query_enrollment, query_qc_status
- Add admin batch operations: one-click full QC + one-click full summary
- Create IIT Admin management module: project config, QC rules, user mapping
Status: Code complete, pending end-to-end testing
Co-authored-by: Cursor <cursoragent@cursor.com >
2026-02-07 21:56:11 +08:00
0c590854b5
docs(iit): Add IIT Manager Agent V2.9 development plan with multi-agent architecture
...
Features:
- Add V2.9 enhancements: Cron Skill, User Profiling, Feedback Loop, Multi-Intent Handling
- Create modular development plan documents (database, engines, services, memory, tasks)
- Add V2.5/V2.6/V2.8/V2.9 design documents for architecture evolution
- Add system design white papers and implementation guides
Architecture:
- Dual-Brain Architecture (SOP + ReAct engines)
- Three-layer memory system (Flow Log, Hot Memory, History Book)
- ProfilerService for personalized responses
- SchedulerService with Cron Skill support
Also includes:
- Frontend nginx config updates
- Backend test scripts for WeChat signature
- Database backup files
Co-authored-by: Cursor <cursoragent@cursor.com >
2026-02-05 22:33:26 +08:00
4b9b90ffb8
feat(iit): Complete REDCap production deployment on Alibaba Cloud ECS
...
Summary:
- Deploy REDCap 15.8.0 on ECS with Docker CE 26.1.3
- Configure RDS MySQL 8.0 database (redcap_prod)
- Setup Nginx reverse proxy with HTTPS/SSL
- Domain configured: https://redcap.xunzhengyixue.com/
Documentation:
- Add ECS deployment guide
- Add deployment info record
- Update system status document (v4.5 -> v4.6)
Status: REDCap production environment fully operational
Co-authored-by: Cursor <cursoragent@cursor.com >
2026-02-02 22:27:05 +08:00
4c2c9b437b
feat(admin): Add activity logs page and fix AI chat markdown rendering
...
- Add paginated activity logs API with filters (date, module, action, keyword)
- Add ActivityLogsPage with table, filters, and detail modal
- Add markdown rendering support for AI chat messages
- Remove prototype placeholder content from chat sidebar
Co-authored-by: Cursor <cursoragent@cursor.com >
2026-02-01 21:04:21 +08:00
aaa29ea9d3
feat(admin): Implement Prompt knowledge base integration
...
Features:
- PromptService enhancement: enhanceWithKnowledge(), loadFullKnowledge(), ragSearch()
- FULL mode: Load entire knowledge base content
- RAG mode: Vector search based on user query
- Knowledge config API: PUT /:code/knowledge-config
- Test render with knowledge injection support
- Frontend: Knowledge config UI in Prompt editor
Bug fixes:
- Fix knowledge config not returned in getPromptDetail
- Fix publish button 400 error (empty request body)
- Fix cache not invalidated after publish
- Add detailed logging for debugging
Documentation:
- Add development record 2026-01-28
- Update ADMIN module status to Phase 4.6
- Update system status document to v4.5
Co-authored-by: Cursor <cursoragent@cursor.com >
2026-02-01 20:26:20 +08:00
0d9e6b9922
feat(admin): Implement System Knowledge Base management module
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Features:
- Backend: SystemKbService with full CRUD (knowledge bases + documents)
- Backend: 8 RESTful API endpoints (list/detail/create/update/delete/upload/download)
- Backend: OSS storage integration (system/knowledge-bases/{kbId}/{docId})
- Backend: RAG engine integration (document parsing, chunking, vectorization)
- Frontend: SystemKbListPage with card-based layout
- Frontend: SystemKbDetailPage with document management table
- Frontend: Master-Detail UX pattern for better user experience
- Document upload (single/batch), download (preserving original filename), delete
Technical:
- Database migration for system_knowledge_bases and system_kb_documents tables
- OSSAdapter.getSignedUrl with Content-Disposition for original filename
- Reuse RAG engine from common/rag for document processing
Tested: Local environment verified, all features working
2026-01-28 21:57:44 +08:00
3a4aa9123c
feat: Add Personal Center module and UI improvements
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- Add ProfilePage with avatar upload, password change, and module status display
- Update logo and favicon for login page and browser tab
- Redirect Data Cleaning module default route to Tool C
- Hide Settings button from top navigation for MVP
- Add avatar display in top navigation bar with refresh sync
- Add Prompt knowledge base integration development plan docs
2026-01-28 18:18:09 +08:00
5d5a174dd7
fix(frontend): Add client_max_body_size to fix 413 error on file upload
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Problem: PKB document upload fails with HTTP 413 in SAE environment
Root cause: Nginx default client_max_body_size is only 1MB
Solution: Add client_max_body_size 50M in http block and location /api/ block
2026-01-27 21:23:59 +08:00
bbf98c4d5c
fix(backend): Resolve PgBoss infinite loop issue and cleanup unused files
...
Backend fixes:
- Fix PgBoss task infinite loop on SAE (root cause: missing queue table constraints)
- Add singletonKey to prevent duplicate job enqueueing
- Add idempotency check in reviewWorker (skip completed tasks)
- Add optimistic locking in reviewService (atomic status update)
Frontend fixes:
- Add isSubmitting state to prevent duplicate submissions in RVW Dashboard
- Fix API baseURL in knowledgeBaseApi (relative path)
Cleanup (removed):
- Old frontend/ directory (migrated to frontend-v2)
- python-microservice/ (unused, replaced by extraction_service)
- Root package.json and node_modules (accidentally created)
- redcap-docker-dev/ (external dependency)
- Various temporary files and outdated docs in root
New documentation:
- docs/07-运维文档/01-PgBoss队列监控与维护.md
- docs/07-运维文档/02-故障预防检查清单.md
- docs/07-运维文档/03-数据库迁移注意事项.md
Database fix applied to RDS:
- Added PRIMARY KEY to platform_schema.queue
- Added 3 missing foreign key constraints
Tested: Local build passed, RDS constraints verified
2026-01-27 18:16:22 +08:00
2481b786d8
deploy: Complete 0126-27 deployment - database upgrade, services update, code recovery
...
Major Changes:
- Database: Install pg_bigm/pgvector plugins, create test database
- Python service: v1.0 -> v1.1, add pymupdf4llm/openpyxl/pypandoc
- Node.js backend: v1.3 -> v1.7, fix pino-pretty and ES Module imports
- Frontend: v1.2 -> v1.3, skip TypeScript check for deployment
- Code recovery: Restore empty files from local backup
Technical Fixes:
- Fix pino-pretty error in production (conditional loading)
- Fix ES Module import paths (add .js extensions)
- Fix OSSAdapter TypeScript errors
- Update Prisma Schema (63 models, 16 schemas)
- Update environment variables (DATABASE_URL, EXTRACTION_SERVICE_URL, OSS)
- Remove deprecated variables (REDIS_URL, DIFY_API_URL, DIFY_API_KEY)
Documentation:
- Create 0126 deployment folder with 8 documents
- Update database development standards v2.0
- Update SAE deployment status records
Deployment Status:
- PostgreSQL: ai_clinical_research_test with plugins
- Python: v1.1 @ 172.17.173.84:8000
- Backend: v1.7 @ 172.17.173.89:3001
- Frontend: v1.3 @ 172.17.173.90:80
Tested: All services running successfully on SAE
2026-01-27 08:13:27 +08:00
01a17f1e6f
feat(admin): Implement operational monitoring MVP and login optimization
...
Summary:
- Add SimpleLog table for activity tracking (admin_schema)
- Implement ActivityService with fire-and-forget pattern
- Add stats API endpoints (overview/live-feed/user-overview/cleanup)
- Complete activity logging for 7 modules (SYSTEM/AIA/PKB/ASL/DC/RVW/IIT)
- Update Admin Dashboard with DAU/DAT metrics and live feed
- Fix user module permission display logic
- Fix login redirect to /ai-qa instead of homepage
- Replace top navigation LOGO with brand image
- Fix PKB workspace layout CSS conflict (rename to .pa-chat-container)
New files:
- backend/src/common/services/activity.service.ts
- backend/src/modules/admin/controllers/statsController.ts
- backend/src/modules/admin/routes/statsRoutes.ts
- frontend-v2/src/modules/admin/api/statsApi.ts
- docs/03-.../04-operational-monitoring-mvp-plan.md
- docs/03-.../04-operational-monitoring-mvp-implementation.md
Tested: All features verified locally
2026-01-25 22:16:16 +08:00
303dd78c54
feat(aia): Protocol Agent MVP complete with one-click generation and Word export
...
- Add one-click research protocol generation with streaming output
- Implement Word document export via Pandoc integration
- Add dynamic dual-panel layout with resizable split pane
- Implement collapsible content for StatePanel stages
- Add conversation history management with title auto-update
- Fix scroll behavior, markdown rendering, and UI layout issues
- Simplify conversation creation logic for reliability
2026-01-25 19:16:36 +08:00
4d7d97ca19
feat(aia): Protocol Agent streaming + editable state panel + protocol generation plan
...
Day 2 Development (2026-01-24):
Backend Enhancements:
- Implement SSE streaming in ProtocolAgentController using createStreamingService
- Add data condensation via LLM in ProtocolOrchestrator.handleProtocolSync
- Support stage editing without resetting progress
- Add explicit JSON output format for each stage in system prompt
- Create independent seed script for Protocol Agent (seed-protocol-agent.ts)
Frontend Improvements:
- Integrate useAIStream hook for typewriter effect in ChatArea
- Add MarkdownContent component for basic Markdown rendering
- Implement StageEditModal for editing stage data (scientific question, PICO, etc.)
- Add edit button to StageCard (visible on hover)
- Fix routing paths from /aia to /ai-qa
- Enhance CSS with full-screen layout and Markdown styles
New Documentation:
- One-click protocol generation development plan (v1.1)
- Editor selection evaluation (Novel vs BlockNote vs Tiptap)
- Novel fork strategy for AI-native editing
Technical Decisions:
- Choose Novel (Fork) as protocol editor for AI-first design
- Two-stage progressive generation: summary in chat, full protocol in editor
- 10-day development plan for protocol generation feature
Code Stats:
- Backend: 3 files modified, 1 new file
- Frontend: 9 files modified, 2 new files
- Docs: 3 new files
Status: Streaming and editable features working, protocol generation pending
2026-01-24 23:06:33 +08:00
596f2dfc02
docs: Update RAG engine docs - pg_bigm v1.2 installation completed
...
Summary:
- pg_bigm v1.2 successfully installed in PostgreSQL 15
- GIN index created for ekb_chunk.content
- Keyword search performance improved 10-100x
Documentation updates:
- RAG engine guide v1.0 -> v1.1 (update Q3, add performance data)
- System status guide v4.1 -> v4.2 (mark pg_bigm as installed)
- pg_bigm installation guide v1.0 -> v1.1 (mark as completed)
Status: Production ready with full RAG capabilities
2026-01-24 19:17:24 +08:00
96290d2f76
feat(aia): Implement Protocol Agent MVP with reusable Agent framework
...
Sprint 1-3 Completed (Backend + Frontend):
Backend (Sprint 1-2):
- Implement 5-layer Agent framework (Query->Planner->Executor->Tools->Reflection)
- Create agent_schema with 6 tables (agent_definitions, stages, prompts, sessions, traces, reflexion_rules)
- Create protocol_schema with 2 tables (protocol_contexts, protocol_generations)
- Implement Protocol Agent core services (Orchestrator, ContextService, PromptBuilder)
- Integrate LLM service adapter (DeepSeek/Qwen/GPT-5/Claude)
- 6 API endpoints with full authentication
- 10/10 API tests passed
Frontend (Sprint 3):
- Add Protocol Agent entry in AgentHub (indigo theme card)
- Implement ProtocolAgentPage with 3-column layout
- Collapsible sidebar (Gemini style, 48px <-> 280px)
- StatePanel with 5 stage cards (scientific_question, pico, study_design, sample_size, endpoints)
- ChatArea with sync button and action cards integration
- 100% prototype design restoration (608 lines CSS)
- Detailed endpoints structure: baseline, exposure, outcomes, confounders
Features:
- 5-stage dialogue flow for research protocol design
- Conversation-driven interaction with sync-to-protocol button
- Real-time context state management
- One-click protocol generation button (UI ready, backend pending)
Database:
- agent_schema: 6 tables for reusable Agent framework
- protocol_schema: 2 tables for Protocol Agent
- Seed data: 1 agent + 5 stages + 9 prompts + 4 reflexion rules
Code Stats:
- Backend: 13 files, 4338 lines
- Frontend: 14 files, 2071 lines
- Total: 27 files, 6409 lines
Status: MVP core functionality completed, pending frontend-backend integration testing
Next: Sprint 4 - One-click protocol generation + Word export
2026-01-24 17:29:24 +08:00
61cdc97eeb
feat(platform): Fix pg-boss queue conflict and add safety standards
...
Summary:
- Fix pg-boss queue conflict (duplicate key violation on queue_pkey)
- Add global error listener to prevent process crash
- Reduce connection pool from 10 to 4
- Add graceful shutdown handling (SIGTERM/SIGINT)
- Fix researchWorker recursive call bug in catch block
- Make screeningWorker idempotent using upsert
Security Standards (v1.1):
- Prohibit recursive retry in Worker catch blocks
- Prohibit payload bloat (only store fileKey/ID in job.data)
- Require Worker idempotency (upsert + unique constraint)
- Recommend task-specific expireInSeconds settings
- Document graceful shutdown pattern
New Features:
- PKB signed URL endpoint for document preview/download
- pg_bigm installation guide for Docker
- Dockerfile.postgres-with-extensions for pgvector + pg_bigm
Documentation:
- Update Postgres-Only async task processing guide (v1.1)
- Add troubleshooting SQL queries
- Update safety checklist
Tested: Local verification passed
2026-01-23 22:07:26 +08:00
9c96f75c52
feat(storage): integrate Alibaba Cloud OSS for file persistence - Add OSSAdapter and LocalAdapter with StorageFactory pattern - Integrate PKB module with OSS upload - Rename difyDocumentId to storageKey - Create 4 OSS buckets and development specification
2026-01-22 22:02:20 +08:00
483c62fb6f
feat(pkb): Replace Dify with self-developed pgvector RAG engine
...
Major milestone: Successfully replaced Dify external service with PostgreSQL + pgvector RAG engine
Backend changes:
- Refactor ragService.ts: Remove dual-track mode, keep only pgvector
- Refactor knowledgeBaseService.ts: Remove Dify creation logic
- Refactor documentService.ts: Remove Dify upload/polling logic
- DifyClient.ts: Convert to deprecated stub file (for legacy compatibility)
- common/rag/index.ts: Update exports
- common/rag/types.ts: Remove Dify types, keep generic RAG types
- config/env.ts: Remove Dify configuration
Frontend changes:
- DashboardPage.tsx: Add delete knowledge base dropdown menu
- KnowledgeBaseList.tsx: Enhance quota warning display
- CreateKBDialog.tsx: Add quota exceeded modal with guidance
- knowledgeBaseApi.ts: Add auth interceptor
Documentation:
- Update PKB module status guide (v2.3)
- Update system status guide (v4.0)
Performance metrics:
- Single query latency: 2.5s
- Single query cost: 0.0025 CNY
- Cross-language accuracy improvement: +20.5%
Remaining tasks:
- OSS storage integration
- pg_bigm extension installation
Tested: End-to-end test passed (create KB -> upload doc -> vector search)
2026-01-21 22:35:50 +08:00
40c2f8e148
feat(rag): Complete RAG engine implementation with pgvector
...
Major Features:
- Created ekb_schema (13th schema) with 3 tables: KB/Document/Chunk
- Implemented EmbeddingService (text-embedding-v4, 1024-dim vectors)
- Implemented ChunkService (smart Markdown chunking)
- Implemented VectorSearchService (multi-query + hybrid search)
- Implemented RerankService (qwen3-rerank)
- Integrated DeepSeek V3 QueryRewriter for cross-language search
- Python service: Added pymupdf4llm for PDF-to-Markdown conversion
- PKB: Dual-mode adapter (pgvector/dify/hybrid)
Architecture:
- Brain-Hand Model: Business layer (DeepSeek) + Engine layer (pgvector)
- Cross-language support: Chinese query matches English documents
- Small Embedding (1024) + Strong Reranker strategy
Performance:
- End-to-end latency: 2.5s
- Cost per query: 0.0025 RMB
- Accuracy improvement: +20.5% (cross-language)
Tests:
- test-embedding-service.ts: Vector embedding verified
- test-rag-e2e.ts: Full pipeline tested
- test-rerank.ts: Rerank quality validated
- test-query-rewrite.ts: Cross-language search verified
- test-pdf-ingest.ts: Real PDF document tested (Dongen 2003.pdf)
Documentation:
- Added 05-RAG-Engine-User-Guide.md
- Added 02-Document-Processing-User-Guide.md
- Updated system status documentation
Status: Production ready
2026-01-21 20:24:29 +08:00
1f5bf2cd65
docs(rag-engine): update architecture design with building-blocks principle
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- Add core design principle: provide building blocks, no strategy selection
- Remove chat() method, strategy determined by business modules
- Add new capabilities: getDocumentFullText(), getAllDocumentsText()
- Add new capabilities: getDocumentSummary(), getAllDocumentsSummaries()
- Add business module strategy examples (PKB/AIA/ASL/RVW)
- Add strategy selection guide (by scale, by scenario)
- Update data model with summary and tokenCount fields
- Add SummaryService to code structure
2026-01-20 20:35:26 +08:00
74a209317e
chore: Remove backup files from Git and update .gitignore
...
Removed from tracking:
- backup_before_pgvector_20260119.sql (database backup)
- postgres_volume_backup_20260119.tar (volume backup)
- pgvector-0.8.0.tar.gz (source archive)
Added to .gitignore:
- Database backup files (*.sql backups, *_backup_*.tar)
- Source code archives (*.tar.gz)
- Excluded Prisma migrations from .sql ignore rule
2026-01-20 00:04:12 +08:00
dfc0fe0b9a
feat(pkb): Integrate pgvector and create Dify replacement plan
...
Summary:
- Migrate PostgreSQL to pgvector/pgvector:pg15 Docker image
- Successfully install and verify pgvector 0.8.1 extension
- Create comprehensive Dify-to-pgvector migration plan
- Update PKB module documentation with pgvector status
- Update system documentation with pgvector integration
Key changes:
- docker-compose.yml: Switch to pgvector/pgvector:pg15 image
- Add EkbDocument and EkbChunk data model design
- Design R-C-R-G hybrid retrieval architecture
- Add clinical data JSONB fields (pico, studyDesign, regimen, safety, criteria, endpoints)
- Create detailed 10-day implementation roadmap
Documentation updates:
- PKB module status: pgvector RAG infrastructure ready
- System status: pgvector 0.8.1 integrated
- New: Dify replacement development plan (01-Dify替换为pgvector开发计划.md)
- New: Enterprise medical knowledge base solution V2
Tested: PostgreSQL with pgvector verified, frontend and backend functionality confirmed
2026-01-20 00:00:58 +08:00
1ece9a4ae8
feat(asl): Add DeepSearch smart literature retrieval MVP
...
Features:
- Integrate unifuncs DeepSearch API (OpenAI compatible protocol)
- SSE real-time streaming for AI thinking process display
- Natural language input, auto-generate PubMed search strategy
- Extract and display PubMed literature links
- Database storage for task records (asl_research_tasks)
Backend:
- researchService.ts - Core business logic with SSE streaming
- researchController.ts - SSE stream endpoint
- researchWorker.ts - Async task worker (backup mode)
- schema.prisma - AslResearchTask model
Frontend:
- ResearchSearch.tsx - Search page with unified content stream
- ResearchSearch.css - Styling (unifuncs-inspired simple design)
- ASLLayout.tsx - Enable menu item
- api/index.ts - Add research API functions
API Endpoints:
- POST /api/v1/asl/research/stream - SSE streaming search
- POST /api/v1/asl/research/tasks - Async task creation
- GET /api/v1/asl/research/tasks/:taskId/status - Task status
Documentation:
- Development record for DeepSearch integration
- Update ASL module status (v1.5)
- Update system status (v3.7)
Known limitations:
- SSE mode, task interrupts when leaving page
- Cost ~0.3 RMB per search (unifuncs API)
2026-01-18 19:15:55 +08:00
57fdc6ef00
feat(aia): Integrate PromptService for 10 AI agents
...
Features:
- Migrate 10 agent prompts from hardcoded to database
- Add grayscale preview support (DRAFT/ACTIVE distribution)
- Implement 3-tier fallback (DB -> Cache -> Hardcoded)
- Add version management and rollback capability
Files changed:
- backend/scripts/migrate-aia-prompts.ts (new migration script)
- backend/src/common/prompt/prompt.fallbacks.ts (add AIA fallbacks)
- backend/src/modules/aia/services/agentService.ts (integrate PromptService)
- backend/src/modules/aia/services/conversationService.ts (pass userId)
- backend/src/modules/aia/types/index.ts (fix AgentStage type)
Documentation:
- docs/03-业务模块/AIA-AI智能问答/06-开发记录/2026-01-18-Prompt管理系统集成.md
- docs/02-通用能力层/00-通用能力层清单.md (add FileCard, Prompt management)
- docs/00-系统总体设计/00-系统当前状态与开发指南.md (update to v3.6)
Prompt codes:
- AIA_SCIENTIFIC_QUESTION, AIA_PICO_ANALYSIS, AIA_TOPIC_EVALUATION
- AIA_OUTCOME_DESIGN, AIA_CRF_DESIGN, AIA_SAMPLE_SIZE
- AIA_PROTOCOL_WRITING, AIA_METHODOLOGY_REVIEW
- AIA_PAPER_POLISH, AIA_PAPER_TRANSLATE
Tested: Migration script executed, all 10 prompts inserted successfully
2026-01-18 15:48:53 +08:00
66255368b7
feat(admin): Add user management and upgrade to module permission system
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Features - User Management (Phase 4.1):
- Database: Add user_modules table for fine-grained module permissions
- Database: Add 4 user permissions (view/create/edit/delete) to role_permissions
- Backend: UserService (780 lines) - CRUD with tenant isolation
- Backend: UserController + UserRoutes (648 lines) - 13 API endpoints
- Backend: Batch import users from Excel
- Frontend: UserListPage (412 lines) - list/filter/search/pagination
- Frontend: UserFormPage (341 lines) - create/edit with module config
- Frontend: UserDetailPage (393 lines) - details/tenant/module management
- Frontend: 3 modal components (592 lines) - import/assign/configure
- API: GET/POST/PUT/DELETE /api/admin/users/* endpoints
Architecture Upgrade - Module Permission System:
- Backend: Add getUserModules() method in auth.service
- Backend: Login API returns modules array in user object
- Frontend: AuthContext adds hasModule() method
- Frontend: Navigation filters modules based on user.modules
- Frontend: RouteGuard checks requiredModule instead of requiredVersion
- Frontend: Remove deprecated version-based permission system
- UX: Only show accessible modules in navigation (clean UI)
- UX: Smart redirect after login (avoid 403 for regular users)
Fixes:
- Fix UTF-8 encoding corruption in ~100 docs files
- Fix pageSize type conversion in userService (String to Number)
- Fix authUser undefined error in TopNavigation
- Fix login redirect logic with role-based access check
- Update Git commit guidelines v1.2 with UTF-8 safety rules
Database Changes:
- CREATE TABLE user_modules (user_id, tenant_id, module_code, is_enabled)
- ADD UNIQUE CONSTRAINT (user_id, tenant_id, module_code)
- INSERT 4 permissions + role assignments
- UPDATE PUBLIC tenant with 8 module subscriptions
Technical:
- Backend: 5 new files (~2400 lines)
- Frontend: 10 new files (~2500 lines)
- Docs: 1 development record + 2 status updates + 1 guideline update
- Total: ~4900 lines of code
Status: User management 100% complete, module permission system operational
2026-01-16 13:42:10 +08:00
98d862dbd4
feat(aia): Complete AIA V2.0 and sync all changes
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AIA V2.0 Major Updates:
- Add StreamingService with OpenAI Compatible format (backend/common/streaming)
- Upgrade Chat component V2 with Ant Design X deep integration
- Implement 12 intelligent agents (5 phases: topic/design/review/data/writing)
- Create AgentHub with 100% prototype V11 restoration
- Create ChatWorkspace with fullscreen immersive experience
- Add ThinkingBlock for deep thinking display
- Add useAIStream Hook for stream handling
- Add ConversationList for conversation management
Backend (~1300 lines):
- common/streaming: OpenAI adapter and streaming service
- modules/aia: 12 agents config, conversation service, attachment service
- Unified API routes to /api/v1 (RVW, PKB, AIA modules)
- Update authentication and permission helpers
Frontend (~3500 lines):
- modules/aia: AgentHub + ChatWorkspace + AgentCard components
- shared/Chat: AIStreamChat, ThinkingBlock, useAIStream, useConversations
- Update all modules API endpoints to v1
- Modern design with theme colors (blue/yellow/teal/purple)
Documentation (~2500 lines):
- AIA module status and development guide
- Universal capabilities catalog (11 services)
- Quick reference card
- System overview updates
- All module documentation synchronization
Other Updates:
- DC Tool C: Python operations and frontend components
- IIT Manager: session memory and wechat service
- PKB/RVW/ASL: API route updates
- Docker configs and deployment scripts
- Database migrations and scripts
- Test files and documentation
Tested: AIA streaming verified, authentication working, core features functional
Status: AIA V2.0 completed (85%), all changes synchronized
2026-01-14 19:19:00 +08:00
1b53ab9d52
feat(aia): Complete AIA V2.0 with universal streaming capabilities
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Major Changes:
- Add StreamingService with OpenAI Compatible format
- Upgrade Chat component V2 with Ant Design X integration
- Implement AIA module with 12 intelligent agents
- Update API routes to unified /api/v1 prefix
- Update system documentation
Backend (~1300 lines):
- common/streaming: OpenAI Compatible adapter
- modules/aia: 12 agents, conversation service, streaming integration
- Update route versions (RVW, PKB to v1)
Frontend (~3500 lines):
- modules/aia: AgentHub + ChatWorkspace (100% prototype restoration)
- shared/Chat: AIStreamChat, ThinkingBlock, useAIStream Hook
- Update API endpoints to v1
Documentation:
- AIA module status guide
- Universal capabilities catalog
- System overview updates
- All module documentation sync
Tested: Stream response verified, authentication working
Status: AIA V2.0 core completed (85%)
2026-01-14 19:15:01 +08:00
3d35e9c58b
feat(aia): Complete AIA V2.0 with universal streaming capabilities
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Major Updates:
- Add StreamingService with OpenAI Compatible format (backend/common/streaming)
- Upgrade Chat component V2 with Ant Design X integration
- Implement AIA module with 12 intelligent agents
- Create AgentHub with 100% prototype V11 restoration
- Create ChatWorkspace with streaming response support
- Add ThinkingBlock for deep thinking display
- Add useAIStream Hook for OpenAI Compatible stream handling
Backend Common Capabilities (~400 lines):
- OpenAIStreamAdapter: SSE adapter with OpenAI format
- StreamingService: unified streaming service
- Support content and reasoning_content dual streams
- Deep thinking tag processing (<think>...</think>)
Frontend Common Capabilities (~2000 lines):
- AIStreamChat: modern streaming chat component
- ThinkingBlock: collapsible deep thinking display
- ConversationList: conversation management with grouping
- useAIStream: OpenAI Compatible stream handler Hook
- useConversations: conversation state management Hook
- Modern design styles (Ultramodern theme)
AIA Module Frontend (~1500 lines):
- AgentHub: 12 agent cards with timeline design
- ChatWorkspace: fullscreen immersive chat interface
- AgentCard: theme-colored cards (blue/yellow/teal/purple)
- 5 phases, 12 agents configuration
- Responsive layout (desktop + mobile)
AIA Module Backend (~900 lines):
- agentService: 12 agents config with system prompts
- conversationService: refactored with StreamingService
- attachmentService: file upload skeleton (30k token limit)
- 12 API endpoints with authentication
- Full CRUD for conversations and messages
Documentation:
- AIA module status and development guide
- Universal capabilities catalog (11 services)
- Quick reference card for developers
- System overview updates
Testing:
- Stream response verified (HTTP 200)
- Authentication working correctly
- Auto conversation creation working
- Deep thinking display working
- Message input and send working
Status: Core features completed (85%), attachment and history loading pending
2026-01-14 19:09:28 +08:00
4ed67a8846
fix(admin): Fix Prompt management list not showing version info and add debug diagnostics
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Summary:
- Fix Prompt list API response schema missing activeVersion and draftVersion fields
- Fastify was filtering out undefined schema fields, causing version columns to show empty
- Add detailed diagnostic logging for Prompt debug mode troubleshooting
- Verify debug mode works correctly (DRAFT version is used when debug enabled)
Changes:
- backend/src/common/prompt/prompt.routes.ts: Add activeVersion and draftVersion to response schema
- backend/src/common/prompt/prompt.service.ts: Add diagnostic logs for setDebugMode and get methods
- PKB module: Various authentication and document handling fixes from previous session
Tested: Debug mode verified working - v2 DRAFT version correctly loaded when debug enabled
2026-01-13 22:22:10 +08:00
4088275290
fix(pkb): fix create KB and upload issues - remove simulated upload, fix department mapping, add upload modal
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Fixed issues:
- Remove simulateUpload function from DashboardPage Step 3
- Map department to description field when creating KB
- Add upload modal in WorkspacePage knowledge assets tab
- Fix DocumentUpload import path (../../stores to ../stores)
Known issue: Dify API validation error during document upload (file uploaded but DB record failed, needs investigation)
Testing: KB creation works, upload dialog opens correctly
2026-01-13 13:17:20 +08:00
d595037316
feat(admin): Complete tenant management and module access control system
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Major Features:
- Tenant management CRUD (list, create, edit, delete, module configuration)
- Dynamic module management system (modules table with 8 modules)
- Multi-tenant module permission merging (ModuleService)
- Module access control middleware (requireModule)
- User module permission API (GET /api/v1/auth/me/modules)
- Frontend module permission filtering (HomePage + TopNavigation)
Module Integration:
- RVW module integrated with PromptService (editorial + methodology)
- All modules (RVW/PKB/ASL/DC) added authenticate + requireModule middleware
- Fixed ReviewTask foreign key constraint (cross-schema issue)
- Removed all MOCK_USER_ID, unified to request.user?.userId
Prompt Management Enhancements:
- Module names displayed in Chinese (RVW -> 智能审稿)
- Enhanced version history with view content and rollback features
- List page shows both activeVersion and draftVersion columns
Database Changes:
- Added platform_schema.modules table
- Modified tenant_modules table (added index and UUID)
- Removed ReviewTask foreign key to public.users (cross-schema fix)
- Seeded 8 modules: RVW, PKB, ASL, DC, IIT, AIA, SSA, ST
Documentation Updates:
- Updated ADMIN module development status
- Updated TODO checklist (89% progress)
- Updated Prompt management plan (Phase 3.5.5 completed)
- Added module authentication specification
Files Changed: 80+
Status: All features tested and verified locally
Next: User management module development
2026-01-13 07:34:30 +08:00
5523ef36ea
feat(admin): Complete Phase 3.5.1-3.5.4 Prompt Management System (83%)
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Summary:
- Implement Prompt management infrastructure and core services
- Build admin portal frontend with light theme
- Integrate CodeMirror 6 editor for non-technical users
Phase 3.5.1: Infrastructure Setup
- Create capability_schema for Prompt storage
- Add prompt_templates and prompt_versions tables
- Add prompt:view/edit/debug/publish permissions
- Migrate RVW prompts to database (RVW_EDITORIAL, RVW_METHODOLOGY)
Phase 3.5.2: PromptService Core
- Implement gray preview logic (DRAFT for debuggers, ACTIVE for users)
- Module-level debug control (setDebugMode)
- Handlebars template rendering
- Variable extraction and validation (extractVariables, validateVariables)
- Three-level disaster recovery (database -> cache -> hardcoded fallback)
Phase 3.5.3: Management API
- 8 RESTful endpoints (/api/admin/prompts/*)
- Permission control (PROMPT_ENGINEER can edit, SUPER_ADMIN can publish)
Phase 3.5.4: Frontend Management UI
- Build admin portal architecture (AdminLayout, OrgLayout)
- Add route system (/admin/*, /org/*)
- Implement PromptListPage (filter, search, debug switch)
- Implement PromptEditor (CodeMirror 6 simplified for clinical users)
- Implement PromptEditorPage (edit, save, publish, test, version history)
Technical Details:
- Backend: 6 files, ~2044 lines (prompt.service.ts 596 lines)
- Frontend: 9 files, ~1735 lines (PromptEditorPage.tsx 399 lines)
- CodeMirror 6: Line numbers, auto-wrap, variable highlight, search, undo/redo
- Chinese-friendly: 15px font, 1.8 line-height, system fonts
Next Step: Phase 3.5.5 - Integrate RVW module with PromptService
Tested: Backend API tests passed (8/8), Frontend pending user testing
Status: Ready for Phase 3.5.5 RVW integration
2026-01-11 21:25:16 +08:00
cdfbc9927a
docs: Update RVW module status to 95% after schema migration
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RVW Module (v3.2):
- Phase 6 complete: Schema isolation (public -> rvw_schema)
- Module progress: 95% complete
- All technical debt resolved except PDF export
System Status (v3.1):
- RVW module updated to 95% completion
- Schema isolation highlighted as technical achievement
Verified: All RVW functions working after migration
2026-01-10 23:18:01 +08:00
6ae0dc8304
chore(rvw): Migrate review_tasks table to rvw_schema
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Database migration:
- Move review_tasks table from public to rvw_schema
- Update Prisma schema @@schema directive
- Regenerate Prisma Client
Verified:
- Table location: rvw_schema
- Prisma ORM queries: working
- Data integrity: 40 records preserved
- User relation: working
Documentation updated to reflect schema migration complete.
2026-01-10 23:09:14 +08:00
440f75255e
feat(rvw): Complete Phase 4-5 - Bug fixes and Word export
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Summary:
- Fix methodology score display issue in task list (show score instead of 'warn')
- Add methodology_score field to database schema
- Fix report display when only methodology agent is selected
- Implement Word document export using docx library
- Update documentation to v3.0/v3.1
Backend changes:
- Add methodologyScore to Prisma schema and TaskSummary type
- Update reviewWorker to save methodologyScore
- Update getTaskList to return methodologyScore
Frontend changes:
- Install docx and file-saver libraries
- Implement handleExportReport with Word generation
- Fix activeTab auto-selection based on available data
- Add proper imports for docx components
Documentation:
- Update RVW module status to 90% (Phase 1-5 complete)
- Update system status document to v3.0
Tested: All review workflows verified, Word export functional
2026-01-10 22:52:15 +08:00
179afa2c6b
feat(rvw): Complete RVW module development Phase 1-3
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Summary:
- Migrate backend to modules/rvw with v2 API routes (/api/v2/rvw)
- Add new database fields: selectedAgents, editorialScore, methodologyStatus, picoExtract, isArchived
- Create frontend module in frontend-v2/src/modules/rvw
- Implement Dashboard with task list, filtering, batch operations
- Implement ReportDetail with dual tabs (editorial/methodology)
- Implement AgentModal for intelligent agent selection
- Register RVW module in moduleRegistry.ts
- Add navigation entry in TopNavigation
- Update documentation for RVW module status (v3.0)
- Update system status document (v2.9)
Features:
- User can select agents: editorial, methodology, or both
- Support batch task execution
- Task status filtering
- Replace console.log with logger service
- Maintain v1 API backward compatibility
Tested: Frontend and backend verified locally
Status: 85% complete (Phase 1-3 done)
2026-01-07 22:39:08 +08:00
06028c6952
feat(pkb): implement complete batch processing workflow and frontend optimization
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- Frontend V3 architecture migration to modules/pkb
- Implement three work modes: full-text reading, deep reading, batch processing
- Complete batch processing: template selection, progress display, result export (CSV)
- Integrate Ant Design X Chat component with streaming support
- Add document upload modal with drag-and-drop support
- Optimize UI: multi-line table display, citation formatting, auto-scroll
- Fix 10+ technical issues: API mapping, state sync, form clearing
- Update documentation: development records and module status
Performance: 3 docs batch processing ~17-28s
Status: PKB module now production-ready (90% complete)
2026-01-07 18:23:43 +08:00
e59676342a
docs(pkb): Add development records and update system status
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Summary:
- Add PKB module development record for 2026-01-07
- Create PKB module status document (00-模块当前状态与开发指南.md)
- Update system status document to v2.7
Documents added:
- docs/03-业务模块/PKB-个人知识库/06-开发记录/2026-01-07_PKB模块前端V3设计实现.md
- docs/03-业务模块/PKB-个人知识库/00-模块当前状态与开发指南.md
Documents updated:
- docs/00-系统总体设计/00-系统当前状态与开发指南.md
PKB module progress: 75% complete
- Frontend Dashboard: 90%
- Frontend Workspace: 85%
- 3 work modes implemented
- Batch processing API pending debug
2026-01-07 10:35:03 +08:00
5a17d096a7
feat(pkb): Complete PKB module frontend migration with V3 design
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Summary:
- Implement PKB Dashboard and Workspace pages based on V3 prototype
- Add single-layer header with integrated Tab navigation
- Implement 3 work modes: Full Text, Deep Read, Batch Processing
- Integrate Ant Design X Chat component for AI conversations
- Create BatchModeComplete with template selection and document processing
- Add compact work mode selector with dropdown design
Backend:
- Migrate PKB controllers and services to /modules/pkb structure
- Register v2 API routes at /api/v2/pkb/knowledge
- Maintain dual API routes for backward compatibility
Technical details:
- Use Zustand for state management
- Handle SSE streaming responses for AI chat
- Support document selection for Deep Read mode
- Implement batch processing with progress tracking
Known issues:
- Batch processing API integration pending
- Knowledge assets page navigation needs optimization
Status: Frontend functional, pending refinement
2026-01-06 22:15:42 +08:00
b31255031e
feat(iit-manager): Add WeChat Official Account integration for patient notifications
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Features:
- PatientWechatCallbackController for URL verification and message handling
- PatientWechatService for template and customer messages
- Support for secure mode (message encryption/decryption)
- Simplified route /wechat/patient/callback for WeChat config
- Event handlers for subscribe/unsubscribe/text messages
- Template message for visit reminders
Technical details:
- Reuse @wecom/crypto for encryption (compatible with Official Account)
- Relaxed Fastify schema validation to prevent early request blocking
- Access token caching (7000s with 5min pre-refresh)
- Comprehensive logging for debugging
Testing: Local URL verification passed, ready for SAE deployment
Status: Code complete, waiting for WeChat platform configuration
2026-01-04 22:53:42 +08:00
