deploy: Complete 0126-27 deployment - database upgrade, services update, code recovery

Major Changes:
- Database: Install pg_bigm/pgvector plugins, create test database
- Python service: v1.0 -> v1.1, add pymupdf4llm/openpyxl/pypandoc
- Node.js backend: v1.3 -> v1.7, fix pino-pretty and ES Module imports
- Frontend: v1.2 -> v1.3, skip TypeScript check for deployment
- Code recovery: Restore empty files from local backup

Technical Fixes:
- Fix pino-pretty error in production (conditional loading)
- Fix ES Module import paths (add .js extensions)
- Fix OSSAdapter TypeScript errors
- Update Prisma Schema (63 models, 16 schemas)
- Update environment variables (DATABASE_URL, EXTRACTION_SERVICE_URL, OSS)
- Remove deprecated variables (REDIS_URL, DIFY_API_URL, DIFY_API_KEY)

Documentation:
- Create 0126 deployment folder with 8 documents
- Update database development standards v2.0
- Update SAE deployment status records

Deployment Status:
- PostgreSQL: ai_clinical_research_test with plugins
- Python: v1.1 @ 172.17.173.84:8000
- Backend: v1.7 @ 172.17.173.89:3001
- Frontend: v1.3 @ 172.17.173.90:80

Tested: All services running successfully on SAE

COMMIT_DAY1.txt

@@ -59,6 +59,10 @@ Status: Day 1 complete (11/11 tasks), ready for Day 2
 
 
 
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+
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+
 
 
 

DC模块代码恢复指南.md

@@ -289,6 +289,10 @@
 
 
 
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Dockerfile.postgres-with-extensions

@@ -55,3 +55,7 @@ EXPOSE 5432
 
 
 
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+

SAE_WECHAT_MP_DEPLOY_STEPS.md

@@ -235,6 +235,10 @@ https://iit.xunzhengyixue.com/api/v1/iit/health
 
 
 
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+
 
 
 

backend/DEPLOY_TO_SAE_FOR_WECHAT_MP.md

@@ -166,6 +166,8 @@ https://iit.xunzhengyixue.com/api/v1/iit/health
 
 
 
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+
 
 
 

backend/RESTART_SERVER_NOW.md

@@ -67,6 +67,8 @@
 
 
 
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+
 
 
 

backend/WECHAT_MP_CONFIG_READY.md

@@ -327,6 +327,8 @@ npx tsx src/modules/iit-manager/test-patient-wechat-url-verify.ts
 
 
 
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+
 
 
 

backend/WECHAT_MP_QUICK_FIX.md

@@ -189,6 +189,8 @@ npm run dev
 
 
 
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+
 
 
 

backend/check_db.ts

@@ -66,6 +66,8 @@ main()
 
 
 
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+
 
 
 

backend/check_db_data.ts

@@ -60,6 +60,8 @@ main()
 
 
 
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backend/check_iit.ts

@@ -55,6 +55,8 @@ main()
 
 
 
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+
 
 
 

backend/check_iit_asl_data.ts

@@ -87,6 +87,8 @@ main()
 
 
 
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+
 
 
 

backend/check_queue_table.ts

@@ -50,6 +50,8 @@ main()
 
 
 
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+
 
 
 

backend/check_rvw_issue.ts

@@ -91,6 +91,8 @@ main()
 
 
 
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+
 
 
 

backend/check_tables.ts

@@ -38,6 +38,8 @@ main()
 
 
 
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backend/compare_db.ts

@@ -126,6 +126,8 @@ main()
 
 
 
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backend/compare_dc_asl.ts

@@ -97,6 +97,8 @@ main()
 
 
 
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+
 
 
 

backend/compare_pkb_aia_rvw.ts

@@ -83,6 +83,8 @@ main()
 
 
 
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+
 
 
 

backend/compare_schema_db.ts

@@ -125,6 +125,8 @@ main()
 
 
 
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+
 
 
 

backend/create_mock_user.sql

@@ -36,6 +36,8 @@ ON CONFLICT (id) DO NOTHING;
 
 
 
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+
 
 
 

backend/create_mock_user_platform.sql

@@ -68,6 +68,8 @@ ON CONFLICT (id) DO NOTHING;
 
 
 
+
+
 
 
 

backend/env.example.md

@@ -81,3 +81,5 @@ OSS_SIGNED_URL_EXPIRES=3600
 
 
 
+
+

backend/migrations/add_data_stats_to_tool_c_session.sql

@@ -86,6 +86,8 @@ WHERE table_schema = 'dc_schema'
 
 
 
+
+
 
 
 

backend/prisma/manual-migrations/001_add_postgres_cache_and_checkpoint.sql

@@ -124,6 +124,8 @@ ORDER BY ordinal_position;
 
 
 
+
+
 
 
 

backend/prisma/manual-migrations/run-migration-002.ts

@@ -137,6 +137,8 @@ runMigration()
 
 
 
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+
 
 
 

backend/prisma/migrations/20251208_add_column_mapping/migration.sql

@@ -71,6 +71,8 @@ COMMENT ON COLUMN "dc_schema"."dc_tool_c_sessions"."column_mapping" IS '列名
 
 
 
+
+
 
 
 

backend/prisma/migrations/create_tool_c_session.sql

@@ -98,6 +98,8 @@ COMMENT ON COLUMN dc_schema.dc_tool_c_sessions.expires_at IS '过期时间（创
 
 
 
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+
 
 
 

backend/prisma/seed-protocol-agent.ts

@@ -389,3 +389,5 @@ seedProtocolAgent()
   });
 
 
+
+

backend/prisma/seeds/protocol-agent-seed.ts

@@ -559,3 +559,5 @@ main()
 
 
 
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backend/rebuild-and-push.ps1

@@ -138,6 +138,8 @@ Write-Host ""
 
 
 
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backend/recover-code-from-cursor-db.js

@@ -248,6 +248,8 @@ function extractCodeBlocks(obj, blocks = []) {
 
 
 
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backend/restore_job_common.sql

@@ -45,6 +45,8 @@ CREATE TABLE IF NOT EXISTS platform_schema.job_common (
 
 
 
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backend/restore_pgboss_functions.sql

@@ -119,6 +119,8 @@ CREATE OR REPLACE FUNCTION platform_schema.delete_queue(queue_name text) RETURNS
 
 
 
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backend/scripts/check-dc-tables.mjs

@@ -267,6 +267,8 @@ checkDCTables();
 
 
 
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+
 
 
 

backend/scripts/create-capability-schema.sql

@@ -20,6 +20,8 @@ CREATE SCHEMA IF NOT EXISTS capability_schema;
 
 
 
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backend/scripts/create-tool-c-ai-history-table.mjs

@@ -219,6 +219,8 @@ createAiHistoryTable()
 
 
 
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backend/scripts/create-tool-c-table.js

@@ -206,6 +206,8 @@ createToolCTable()
 
 
 
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+
 
 
 

backend/scripts/create-tool-c-table.mjs

@@ -203,6 +203,8 @@ createToolCTable()
 
 
 
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+
 
 
 

backend/scripts/migrate-aia-prompts.ts

@@ -326,3 +326,5 @@ main()
 
 
 
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+

backend/scripts/setup-prompt-system.ts

@@ -130,6 +130,8 @@ main()
 
 
 
+
+
 
 
 

backend/scripts/test-pkb-apis-simple.ts

@@ -350,6 +350,8 @@ runTests().catch(error => {
 
 
 
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backend/scripts/test-prompt-api.ts

@@ -96,6 +96,8 @@ testAPI().catch(console.error);
 
 
 
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+
 
 
 

backend/scripts/test-unifuncs-deepsearch.ts

@@ -129,3 +129,5 @@ testDeepSearch().catch(console.error);
 
 
 
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+

backend/scripts/verify-pkb-rvw-schema.ts

@@ -315,6 +315,8 @@ verifySchemas()
 
 
 
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backend/src/common/auth/jwt.service.ts

@@ -203,6 +203,8 @@ export const jwtService = new JWTService();
 
 
 
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backend/src/common/jobs/utils.ts

@@ -335,6 +335,8 @@ export function getBatchItems<T>(
 
 
 
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backend/src/common/prompt/prompt.types.ts

@@ -86,6 +86,8 @@ export interface VariableValidation {
 
 
 
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backend/src/common/rag/ChunkService.ts

@@ -359,3 +359,5 @@ export default ChunkService;
 
 
 
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backend/src/common/rag/DifyClient.ts

@@ -55,3 +55,5 @@ export const DifyClient = DeprecatedDifyClient;
 
 
 
+
+

backend/src/common/storage/OSSAdapter.ts

@@ -275,11 +275,12 @@ export class OSSAdapter implements StorageAdapter {
       const normalizedKey = this.normalizeKey(key)
       
       const result = await this.client.head(normalizedKey)
+      const headers = result.res.headers as any;
       
       return {
-        size: parseInt(result.res.headers['content-length'] as string, 10),
-        contentType: result.res.headers['content-type'] as string,
-        lastModified: new Date(result.res.headers['last-modified'] as string),
+        size: parseInt(headers['content-length'] as string, 10),
+        contentType: headers['content-type'] as string,
+        lastModified: new Date(headers['last-modified'] as string),
       }
     } catch (error: any) {
       if (error.code === 'NoSuchKey') {

backend/src/common/streaming/OpenAIStreamAdapter.ts

@@ -7,8 +7,8 @@
 
 import { FastifyReply } from 'fastify';
 import { v4 as uuidv4 } from 'uuid';
-import type { OpenAIStreamChunk, StreamOptions, THINKING_TAGS } from './types';
-import { logger } from '../logging/logger';
+import type { OpenAIStreamChunk, StreamOptions, THINKING_TAGS } from './types.js';
+import { logger } from '../logging/logger.js';
 
 /**
  * OpenAI 流式响应适配器
@@ -210,3 +210,5 @@ export function createOpenAIStreamAdapter(
 
 
 
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+

backend/src/common/streaming/StreamingService.ts

@@ -6,11 +6,11 @@
  */
 
 import { FastifyReply } from 'fastify';
-import { OpenAIStreamAdapter, createOpenAIStreamAdapter } from './OpenAIStreamAdapter';
-import { StreamOptions, StreamCallbacks, THINKING_TAGS, OpenAIMessage } from './types';
-import { LLMFactory } from '../llm/adapters/LLMFactory';
-import type { Message as LLMMessage } from '../llm/adapters/types';
-import { logger } from '../logging/logger';
+import { OpenAIStreamAdapter, createOpenAIStreamAdapter } from './OpenAIStreamAdapter.js';
+import { StreamOptions, StreamCallbacks, THINKING_TAGS, OpenAIMessage } from './types.js';
+import { LLMFactory } from '../llm/adapters/LLMFactory.js';
+import type { Message as LLMMessage } from '../llm/adapters/types.js';
+import { logger } from '../logging/logger.js';
 
 /**
  * 深度思考标签处理结果
@@ -216,3 +216,5 @@ export async function streamChat(
 
 
 
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backend/src/common/streaming/index.ts

@@ -5,8 +5,8 @@
  * 支持 Ant Design X 的 XRequest 直接消费
  */
 
-export { OpenAIStreamAdapter, createOpenAIStreamAdapter } from './OpenAIStreamAdapter';
-export { StreamingService, createStreamingService, streamChat } from './StreamingService';
+export { OpenAIStreamAdapter, createOpenAIStreamAdapter } from './OpenAIStreamAdapter.js';
+export { StreamingService, createStreamingService, streamChat } from './StreamingService.js';
 
 export type {
   OpenAIMessage,
@@ -14,9 +14,11 @@ export type {
   StreamOptions,
   StreamCallbacks,
   SSEEventType,
-} from './types';
+} from './types.js';
+
+export { THINKING_TAGS } from './types.js';
+
 
-export { THINKING_TAGS } from './types';
 
 
 

backend/src/common/streaming/types.ts

@@ -109,3 +109,5 @@ export type SSEEventType =
 
 
 
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backend/src/modules/admin/routes/tenantRoutes.ts

@@ -92,6 +92,8 @@ export async function moduleRoutes(fastify: FastifyInstance) {
 
 
 
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backend/src/modules/admin/types/tenant.types.ts

@@ -122,6 +122,8 @@ export interface PaginatedResponse<T> {
 
 
 
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backend/src/modules/admin/types/user.types.ts

@@ -172,3 +172,5 @@ export const ROLE_DISPLAY_NAMES: Record<UserRole, string> = {
 
 
 
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backend/src/modules/agent/protocol/services/LLMServiceAdapter.ts

@@ -183,3 +183,5 @@ export function createLLMServiceAdapter(): LLMServiceInterface {
 
 
 
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backend/src/modules/agent/protocol/services/PromptBuilder.ts

@@ -285,3 +285,5 @@ export class PromptBuilder {
 
 
 
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backend/src/modules/agent/protocol/services/ProtocolExportService.ts

@@ -295,3 +295,5 @@ export class ProtocolExportService {
   }
 }
 
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backend/src/modules/agent/types/index.ts

@@ -381,3 +381,5 @@ export interface PromptRenderContext {
 
 
 
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backend/src/modules/aia/controllers/agentController.ts

@@ -247,3 +247,5 @@ async function matchIntent(query: string): Promise<{
 
 
 
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backend/src/modules/aia/controllers/attachmentController.ts

@@ -101,3 +101,5 @@ export async function uploadAttachment(
 
 
 
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backend/src/modules/aia/index.ts

@@ -30,3 +30,5 @@ export { aiaRoutes };
 
 
 
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backend/src/modules/asl/fulltext-screening/__tests__/api-integration-test.ts

@@ -371,6 +371,8 @@ runTests().catch((error) => {
 
 
 
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backend/src/modules/asl/fulltext-screening/__tests__/e2e-real-test-v2.ts

@@ -312,6 +312,8 @@ runTest()
 
 
 
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backend/src/modules/asl/fulltext-screening/__tests__/fulltext-screening-api.http

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backend/src/modules/dc/tool-b/services/ConflictDetectionService.ts

@@ -286,6 +286,8 @@ export const conflictDetectionService = new ConflictDetectionService();
 
 
 
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backend/src/modules/dc/tool-c/README.md

@@ -236,6 +236,8 @@ curl -X POST http://localhost:3000/api/v1/dc/tool-c/test/execute \
 
 
 
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backend/src/modules/dc/tool-c/controllers/StreamAIController.ts

@@ -290,6 +290,8 @@ export const streamAIController = new StreamAIController();
 
 
 
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backend/src/modules/iit-manager/agents/SessionMemory.ts

@@ -199,6 +199,8 @@ logger.info('[SessionMemory] 会话记忆管理器已启动', {
 
 
 
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backend/src/modules/iit-manager/check-iit-table-structure.ts

@@ -133,6 +133,8 @@ checkTableStructure();
 
 
 
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backend/src/modules/iit-manager/check-project-config.ts

@@ -120,6 +120,8 @@ checkProjectConfig().catch(console.error);
 
 
 
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backend/src/modules/iit-manager/check-test-project-in-db.ts

@@ -102,6 +102,8 @@ main();
 
 
 
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backend/src/modules/iit-manager/docs/微信服务号接入指南.md

@@ -559,6 +559,8 @@ URL: https://iit.xunzhengyixue.com/api/v1/iit/patient-wechat/callback
 
 
 
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backend/src/modules/iit-manager/generate-wechat-tokens.ts

@@ -194,6 +194,8 @@ console.log('');
 
 
 
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backend/src/modules/iit-manager/services/PatientWechatService.ts

@@ -511,6 +511,8 @@ export const patientWechatService = new PatientWechatService();
 
 
 
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backend/src/modules/iit-manager/test-chatservice-dify.ts

@@ -156,6 +156,8 @@ testDifyIntegration().catch(error => {
 
 
 
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backend/src/modules/iit-manager/test-iit-database.ts

@@ -185,6 +185,8 @@ testIitDatabase()
 
 
 
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backend/src/modules/iit-manager/test-patient-wechat-config.ts

@@ -171,6 +171,8 @@ if (hasError) {
 
 
 
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backend/src/modules/iit-manager/test-patient-wechat-url-verify.ts

@@ -197,6 +197,8 @@ async function testUrlVerification() {
 
 
 
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backend/src/modules/iit-manager/test-redcap-query-from-db.ts

@@ -278,6 +278,8 @@ main().catch((error) => {
 
 
 
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backend/src/modules/iit-manager/test-wechat-mp-local.ps1

@@ -162,6 +162,8 @@ Write-Host ""
 
 
 
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backend/src/modules/iit-manager/types/index.ts

@@ -255,6 +255,8 @@ export interface CachedProtocolRules {
 
 
 
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backend/src/modules/pkb/routes/health.ts

@@ -68,6 +68,8 @@ export default async function healthRoutes(fastify: FastifyInstance) {
 
 
 
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backend/src/modules/rvw/__tests__/api.http

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backend/src/modules/rvw/__tests__/test-api.ps1

@@ -131,6 +131,8 @@ Write-Host "  - 删除任务: DELETE $BaseUrl/api/v1/rvw/tasks/{taskId}" -Foregr
 
 
 
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backend/src/modules/rvw/index.ts

@@ -45,6 +45,8 @@ export * from './services/utils.js';
 
 
 
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backend/src/modules/rvw/services/utils.ts

@@ -136,6 +136,8 @@ export function validateAgentSelection(agents: string[]): void {
 
 
 
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backend/src/tests/README.md

@@ -436,6 +436,8 @@ SET session_replication_role = 'origin';
 
 
 
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backend/src/tests/test-cross-language-search.ts

@@ -117,3 +117,5 @@ testCrossLanguageSearch();
 
 
 
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backend/src/tests/test-query-rewrite.ts

@@ -179,3 +179,5 @@ testQueryRewrite();
 
 
 
+
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backend/src/tests/test-rerank.ts

@@ -125,3 +125,5 @@ testRerank();
 
 
 
+
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backend/src/tests/verify-test1-database.sql

@@ -138,6 +138,8 @@ WHERE key = 'verify_test';
 
 
 
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+
 
 
 

backend/src/tests/verify-test1-database.ts

@@ -281,6 +281,8 @@ verifyDatabase()
 
 
 
+
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backend/src/types/global.d.ts

@@ -71,6 +71,8 @@ export {}
 
 
 
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backend/sync-dc-database.ps1

@@ -94,6 +94,8 @@ Write-Host "✅ 完成！" -ForegroundColor Green
 
 
 
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backend/temp_check.sql

@@ -19,6 +19,8 @@ SELECT schema_name FROM information_schema.schemata WHERE schema_name NOT IN ('p
 
 
 
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backend/test-pkb-migration.http

@@ -182,6 +182,8 @@ DELETE {{baseUrl}}/api/v1/pkb/knowledge/knowledge-bases/{{testKbId}}
 
 
 
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backend/test-tool-c-advanced-scenarios.mjs

@@ -381,6 +381,8 @@ runAdvancedTests().catch(error => {
 
 
 
+
+