Files
AIclinicalresearch/python-microservice/operations/recode.py
HaHafeng 96290d2f76 feat(aia): Implement Protocol Agent MVP with reusable Agent framework
Sprint 1-3 Completed (Backend + Frontend):

Backend (Sprint 1-2):
- Implement 5-layer Agent framework (Query->Planner->Executor->Tools->Reflection)
- Create agent_schema with 6 tables (agent_definitions, stages, prompts, sessions, traces, reflexion_rules)
- Create protocol_schema with 2 tables (protocol_contexts, protocol_generations)
- Implement Protocol Agent core services (Orchestrator, ContextService, PromptBuilder)
- Integrate LLM service adapter (DeepSeek/Qwen/GPT-5/Claude)
- 6 API endpoints with full authentication
- 10/10 API tests passed

Frontend (Sprint 3):
- Add Protocol Agent entry in AgentHub (indigo theme card)
- Implement ProtocolAgentPage with 3-column layout
- Collapsible sidebar (Gemini style, 48px <-> 280px)
- StatePanel with 5 stage cards (scientific_question, pico, study_design, sample_size, endpoints)
- ChatArea with sync button and action cards integration
- 100% prototype design restoration (608 lines CSS)
- Detailed endpoints structure: baseline, exposure, outcomes, confounders

Features:
- 5-stage dialogue flow for research protocol design
- Conversation-driven interaction with sync-to-protocol button
- Real-time context state management
- One-click protocol generation button (UI ready, backend pending)

Database:
- agent_schema: 6 tables for reusable Agent framework
- protocol_schema: 2 tables for Protocol Agent
- Seed data: 1 agent + 5 stages + 9 prompts + 4 reflexion rules

Code Stats:
- Backend: 13 files, 4338 lines
- Frontend: 14 files, 2071 lines
- Total: 27 files, 6409 lines

Status: MVP core functionality completed, pending frontend-backend integration testing

Next: Sprint 4 - One-click protocol generation + Word export
2026-01-24 17:29:24 +08:00

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Python
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"""
数值映射(重编码)操作
将分类变量的原始值映射为新值男→1女→2
"""
import pandas as pd
from typing import Dict, Any, Optional
def apply_recode(
df: pd.DataFrame,
column: str,
mapping: Dict[Any, Any],
create_new_column: bool = True,
new_column_name: Optional[str] = None
) -> pd.DataFrame:
"""
应用数值映射
Args:
df: 输入数据框
column: 要重编码的列名
mapping: 映射字典,如 {'': 1, '': 2}
create_new_column: 是否创建新列True或覆盖原列False
new_column_name: 新列名create_new_column=True时使用
Returns:
重编码后的数据框
Examples:
>>> df = pd.DataFrame({'性别': ['', '', '', '']})
>>> mapping = {'': 1, '': 2}
>>> result = apply_recode(df, '性别', mapping, True, '性别_编码')
>>> result['性别_编码'].tolist()
[1, 2, 1, 2]
"""
if df.empty:
return df
# 验证列是否存在
if column not in df.columns:
raise KeyError(f"'{column}' 不存在")
if not mapping:
raise ValueError('映射字典不能为空')
# 确定目标列名
if create_new_column:
target_column = new_column_name or f'{column}_编码'
else:
target_column = column
# 创建结果数据框(避免修改原数据)
result = df.copy()
# 应用映射
result[target_column] = result[column].map(mapping)
# 统计结果
mapped_count = result[target_column].notna().sum()
unmapped_count = result[target_column].isna().sum()
total_count = len(result)
print(f'映射完成: {mapped_count} 个值成功映射')
if unmapped_count > 0:
print(f'警告: {unmapped_count} 个值未找到对应映射')
# 找出未映射的唯一值
unmapped_mask = result[target_column].isna()
unmapped_values = result.loc[unmapped_mask, column].unique()
print(f'未映射的值: {list(unmapped_values)[:10]}') # 最多显示10个
# 映射成功率
success_rate = (mapped_count / total_count * 100) if total_count > 0 else 0
print(f'映射成功率: {success_rate:.1f}%')
return result