Files
AIclinicalresearch/extraction_service/.dockerignore
HaHafeng 96290d2f76 feat(aia): Implement Protocol Agent MVP with reusable Agent framework
Sprint 1-3 Completed (Backend + Frontend):

Backend (Sprint 1-2):
- Implement 5-layer Agent framework (Query->Planner->Executor->Tools->Reflection)
- Create agent_schema with 6 tables (agent_definitions, stages, prompts, sessions, traces, reflexion_rules)
- Create protocol_schema with 2 tables (protocol_contexts, protocol_generations)
- Implement Protocol Agent core services (Orchestrator, ContextService, PromptBuilder)
- Integrate LLM service adapter (DeepSeek/Qwen/GPT-5/Claude)
- 6 API endpoints with full authentication
- 10/10 API tests passed

Frontend (Sprint 3):
- Add Protocol Agent entry in AgentHub (indigo theme card)
- Implement ProtocolAgentPage with 3-column layout
- Collapsible sidebar (Gemini style, 48px <-> 280px)
- StatePanel with 5 stage cards (scientific_question, pico, study_design, sample_size, endpoints)
- ChatArea with sync button and action cards integration
- 100% prototype design restoration (608 lines CSS)
- Detailed endpoints structure: baseline, exposure, outcomes, confounders

Features:
- 5-stage dialogue flow for research protocol design
- Conversation-driven interaction with sync-to-protocol button
- Real-time context state management
- One-click protocol generation button (UI ready, backend pending)

Database:
- agent_schema: 6 tables for reusable Agent framework
- protocol_schema: 2 tables for Protocol Agent
- Seed data: 1 agent + 5 stages + 9 prompts + 4 reflexion rules

Code Stats:
- Backend: 13 files, 4338 lines
- Frontend: 14 files, 2071 lines
- Total: 27 files, 6409 lines

Status: MVP core functionality completed, pending frontend-backend integration testing

Next: Sprint 4 - One-click protocol generation + Word export
2026-01-24 17:29:24 +08:00

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# Python
__pycache__/
*.py[cod]
*$py.class
*.so
.Python
venv/
env/
ENV/
.venv
# 测试
.pytest_cache/
.coverage
htmlcov/
*.log
# IDE
.vscode/
.idea/
*.swp
*.swo
# 文档
*.md
docs/
# Git
.git/
.gitignore
# 环境变量
.env
.env.local
# 临时文件
*.tmp
temp/
tmp/
uploads/
# 模型缓存 (避免打包Nougat模型)
.cache/
models/
*.pth
*.pt
*.onnx