Files
AIclinicalresearch/backend/prisma/migrations/manual/ekb_create_indexes.sql
HaHafeng 96290d2f76 feat(aia): Implement Protocol Agent MVP with reusable Agent framework
Sprint 1-3 Completed (Backend + Frontend):

Backend (Sprint 1-2):
- Implement 5-layer Agent framework (Query->Planner->Executor->Tools->Reflection)
- Create agent_schema with 6 tables (agent_definitions, stages, prompts, sessions, traces, reflexion_rules)
- Create protocol_schema with 2 tables (protocol_contexts, protocol_generations)
- Implement Protocol Agent core services (Orchestrator, ContextService, PromptBuilder)
- Integrate LLM service adapter (DeepSeek/Qwen/GPT-5/Claude)
- 6 API endpoints with full authentication
- 10/10 API tests passed

Frontend (Sprint 3):
- Add Protocol Agent entry in AgentHub (indigo theme card)
- Implement ProtocolAgentPage with 3-column layout
- Collapsible sidebar (Gemini style, 48px <-> 280px)
- StatePanel with 5 stage cards (scientific_question, pico, study_design, sample_size, endpoints)
- ChatArea with sync button and action cards integration
- 100% prototype design restoration (608 lines CSS)
- Detailed endpoints structure: baseline, exposure, outcomes, confounders

Features:
- 5-stage dialogue flow for research protocol design
- Conversation-driven interaction with sync-to-protocol button
- Real-time context state management
- One-click protocol generation button (UI ready, backend pending)

Database:
- agent_schema: 6 tables for reusable Agent framework
- protocol_schema: 2 tables for Protocol Agent
- Seed data: 1 agent + 5 stages + 9 prompts + 4 reflexion rules

Code Stats:
- Backend: 13 files, 4338 lines
- Frontend: 14 files, 2071 lines
- Total: 27 files, 6409 lines

Status: MVP core functionality completed, pending frontend-backend integration testing

Next: Sprint 4 - One-click protocol generation + Word export
2026-01-24 17:29:24 +08:00

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-- ============================================================
-- EKB Schema 索引创建脚本
-- 执行时机prisma migrate 之后手动执行
-- 参考文档docs/02-通用能力层/03-RAG引擎/04-数据模型设计.md
-- ============================================================
-- 1. 确保 pgvector 扩展已启用
CREATE EXTENSION IF NOT EXISTS vector;
-- 2. 确保 pg_bigm 扩展已启用(中文关键词检索)
CREATE EXTENSION IF NOT EXISTS pg_bigm;
-- ===== MVP 阶段必须创建 =====
-- 3. HNSW 向量索引(语义检索核心)
-- 参数说明m=16 每层最大连接数ef_construction=64 构建时搜索范围
CREATE INDEX IF NOT EXISTS idx_ekb_chunk_embedding
ON "ekb_schema"."ekb_chunk"
USING hnsw (embedding vector_cosine_ops)
WITH (m = 16, ef_construction = 64);
-- ===== Phase 2 阶段使用(可预创建)=====
-- 4. pg_bigm 中文关键词索引
CREATE INDEX IF NOT EXISTS idx_ekb_chunk_content_bigm
ON "ekb_schema"."ekb_chunk"
USING gin (content gin_bigm_ops);
-- 5. 文档摘要关键词索引
CREATE INDEX IF NOT EXISTS idx_ekb_doc_summary_bigm
ON "ekb_schema"."ekb_document"
USING gin (summary gin_bigm_ops);
-- 6. 全文内容关键词索引
CREATE INDEX IF NOT EXISTS idx_ekb_doc_text_bigm
ON "ekb_schema"."ekb_document"
USING gin (extracted_text gin_bigm_ops);
-- ===== Phase 3 阶段使用(可预创建)=====
-- 7. JSONB GIN 索引metadata 查询加速)
CREATE INDEX IF NOT EXISTS idx_ekb_doc_metadata_gin
ON "ekb_schema"."ekb_document"
USING gin (metadata jsonb_path_ops);
-- 8. JSONB GIN 索引structuredData 查询加速)
CREATE INDEX IF NOT EXISTS idx_ekb_doc_structured_gin
ON "ekb_schema"."ekb_document"
USING gin (structured_data jsonb_path_ops);
-- 9. 标签数组索引
CREATE INDEX IF NOT EXISTS idx_ekb_doc_tags_gin
ON "ekb_schema"."ekb_document"
USING gin (tags);
-- 10. 切片元数据索引
CREATE INDEX IF NOT EXISTS idx_ekb_chunk_metadata_gin
ON "ekb_schema"."ekb_chunk"
USING gin (metadata jsonb_path_ops);
-- ===== 验证索引创建 =====
-- SELECT indexname, indexdef FROM pg_indexes WHERE schemaname = 'ekb_schema';