2481b786d8
deploy: Complete 0126-27 deployment - database upgrade, services update, code recovery
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Major Changes:
- Database: Install pg_bigm/pgvector plugins, create test database
- Python service: v1.0 -> v1.1, add pymupdf4llm/openpyxl/pypandoc
- Node.js backend: v1.3 -> v1.7, fix pino-pretty and ES Module imports
- Frontend: v1.2 -> v1.3, skip TypeScript check for deployment
- Code recovery: Restore empty files from local backup
Technical Fixes:
- Fix pino-pretty error in production (conditional loading)
- Fix ES Module import paths (add .js extensions)
- Fix OSSAdapter TypeScript errors
- Update Prisma Schema (63 models, 16 schemas)
- Update environment variables (DATABASE_URL, EXTRACTION_SERVICE_URL, OSS)
- Remove deprecated variables (REDIS_URL, DIFY_API_URL, DIFY_API_KEY)
Documentation:
- Create 0126 deployment folder with 8 documents
- Update database development standards v2.0
- Update SAE deployment status records
Deployment Status:
- PostgreSQL: ai_clinical_research_test with plugins
- Python: v1.1 @ 172.17.173.84:8000
- Backend: v1.7 @ 172.17.173.89:3001
- Frontend: v1.3 @ 172.17.173.90:80
Tested: All services running successfully on SAE
2026-01-27 08:13:27 +08:00
303dd78c54
feat(aia): Protocol Agent MVP complete with one-click generation and Word export
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- Add one-click research protocol generation with streaming output
- Implement Word document export via Pandoc integration
- Add dynamic dual-panel layout with resizable split pane
- Implement collapsible content for StatePanel stages
- Add conversation history management with title auto-update
- Fix scroll behavior, markdown rendering, and UI layout issues
- Simplify conversation creation logic for reliability
2026-01-25 19:16:36 +08:00
96290d2f76
feat(aia): Implement Protocol Agent MVP with reusable Agent framework
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Sprint 1-3 Completed (Backend + Frontend):
Backend (Sprint 1-2):
- Implement 5-layer Agent framework (Query->Planner->Executor->Tools->Reflection)
- Create agent_schema with 6 tables (agent_definitions, stages, prompts, sessions, traces, reflexion_rules)
- Create protocol_schema with 2 tables (protocol_contexts, protocol_generations)
- Implement Protocol Agent core services (Orchestrator, ContextService, PromptBuilder)
- Integrate LLM service adapter (DeepSeek/Qwen/GPT-5/Claude)
- 6 API endpoints with full authentication
- 10/10 API tests passed
Frontend (Sprint 3):
- Add Protocol Agent entry in AgentHub (indigo theme card)
- Implement ProtocolAgentPage with 3-column layout
- Collapsible sidebar (Gemini style, 48px <-> 280px)
- StatePanel with 5 stage cards (scientific_question, pico, study_design, sample_size, endpoints)
- ChatArea with sync button and action cards integration
- 100% prototype design restoration (608 lines CSS)
- Detailed endpoints structure: baseline, exposure, outcomes, confounders
Features:
- 5-stage dialogue flow for research protocol design
- Conversation-driven interaction with sync-to-protocol button
- Real-time context state management
- One-click protocol generation button (UI ready, backend pending)
Database:
- agent_schema: 6 tables for reusable Agent framework
- protocol_schema: 2 tables for Protocol Agent
- Seed data: 1 agent + 5 stages + 9 prompts + 4 reflexion rules
Code Stats:
- Backend: 13 files, 4338 lines
- Frontend: 14 files, 2071 lines
- Total: 27 files, 6409 lines
Status: MVP core functionality completed, pending frontend-backend integration testing
Next: Sprint 4 - One-click protocol generation + Word export
2026-01-24 17:29:24 +08:00
61cdc97eeb
feat(platform): Fix pg-boss queue conflict and add safety standards
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Summary:
- Fix pg-boss queue conflict (duplicate key violation on queue_pkey)
- Add global error listener to prevent process crash
- Reduce connection pool from 10 to 4
- Add graceful shutdown handling (SIGTERM/SIGINT)
- Fix researchWorker recursive call bug in catch block
- Make screeningWorker idempotent using upsert
Security Standards (v1.1):
- Prohibit recursive retry in Worker catch blocks
- Prohibit payload bloat (only store fileKey/ID in job.data)
- Require Worker idempotency (upsert + unique constraint)
- Recommend task-specific expireInSeconds settings
- Document graceful shutdown pattern
New Features:
- PKB signed URL endpoint for document preview/download
- pg_bigm installation guide for Docker
- Dockerfile.postgres-with-extensions for pgvector + pg_bigm
Documentation:
- Update Postgres-Only async task processing guide (v1.1)
- Add troubleshooting SQL queries
- Update safety checklist
Tested: Local verification passed
2026-01-23 22:07:26 +08:00
9c96f75c52
feat(storage): integrate Alibaba Cloud OSS for file persistence - Add OSSAdapter and LocalAdapter with StorageFactory pattern - Integrate PKB module with OSS upload - Rename difyDocumentId to storageKey - Create 4 OSS buckets and development specification
2026-01-22 22:02:20 +08:00
40c2f8e148
feat(rag): Complete RAG engine implementation with pgvector
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Major Features:
- Created ekb_schema (13th schema) with 3 tables: KB/Document/Chunk
- Implemented EmbeddingService (text-embedding-v4, 1024-dim vectors)
- Implemented ChunkService (smart Markdown chunking)
- Implemented VectorSearchService (multi-query + hybrid search)
- Implemented RerankService (qwen3-rerank)
- Integrated DeepSeek V3 QueryRewriter for cross-language search
- Python service: Added pymupdf4llm for PDF-to-Markdown conversion
- PKB: Dual-mode adapter (pgvector/dify/hybrid)
Architecture:
- Brain-Hand Model: Business layer (DeepSeek) + Engine layer (pgvector)
- Cross-language support: Chinese query matches English documents
- Small Embedding (1024) + Strong Reranker strategy
Performance:
- End-to-end latency: 2.5s
- Cost per query: 0.0025 RMB
- Accuracy improvement: +20.5% (cross-language)
Tests:
- test-embedding-service.ts: Vector embedding verified
- test-rag-e2e.ts: Full pipeline tested
- test-rerank.ts: Rerank quality validated
- test-query-rewrite.ts: Cross-language search verified
- test-pdf-ingest.ts: Real PDF document tested (Dongen 2003.pdf)
Documentation:
- Added 05-RAG-Engine-User-Guide.md
- Added 02-Document-Processing-User-Guide.md
- Updated system status documentation
Status: Production ready
2026-01-21 20:24:29 +08:00
dfc0fe0b9a
feat(pkb): Integrate pgvector and create Dify replacement plan
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Summary:
- Migrate PostgreSQL to pgvector/pgvector:pg15 Docker image
- Successfully install and verify pgvector 0.8.1 extension
- Create comprehensive Dify-to-pgvector migration plan
- Update PKB module documentation with pgvector status
- Update system documentation with pgvector integration
Key changes:
- docker-compose.yml: Switch to pgvector/pgvector:pg15 image
- Add EkbDocument and EkbChunk data model design
- Design R-C-R-G hybrid retrieval architecture
- Add clinical data JSONB fields (pico, studyDesign, regimen, safety, criteria, endpoints)
- Create detailed 10-day implementation roadmap
Documentation updates:
- PKB module status: pgvector RAG infrastructure ready
- System status: pgvector 0.8.1 integrated
- New: Dify replacement development plan (01-Dify替换为pgvector开发计划.md)
- New: Enterprise medical knowledge base solution V2
Tested: PostgreSQL with pgvector verified, frontend and backend functionality confirmed
2026-01-20 00:00:58 +08:00
57fdc6ef00
feat(aia): Integrate PromptService for 10 AI agents
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Features:
- Migrate 10 agent prompts from hardcoded to database
- Add grayscale preview support (DRAFT/ACTIVE distribution)
- Implement 3-tier fallback (DB -> Cache -> Hardcoded)
- Add version management and rollback capability
Files changed:
- backend/scripts/migrate-aia-prompts.ts (new migration script)
- backend/src/common/prompt/prompt.fallbacks.ts (add AIA fallbacks)
- backend/src/modules/aia/services/agentService.ts (integrate PromptService)
- backend/src/modules/aia/services/conversationService.ts (pass userId)
- backend/src/modules/aia/types/index.ts (fix AgentStage type)
Documentation:
- docs/03-业务模块/AIA-AI智能问答/06-开发记录/2026-01-18-Prompt管理系统集成.md
- docs/02-通用能力层/00-通用能力层清单.md (add FileCard, Prompt management)
- docs/00-系统总体设计/00-系统当前状态与开发指南.md (update to v3.6)
Prompt codes:
- AIA_SCIENTIFIC_QUESTION, AIA_PICO_ANALYSIS, AIA_TOPIC_EVALUATION
- AIA_OUTCOME_DESIGN, AIA_CRF_DESIGN, AIA_SAMPLE_SIZE
- AIA_PROTOCOL_WRITING, AIA_METHODOLOGY_REVIEW
- AIA_PAPER_POLISH, AIA_PAPER_TRANSLATE
Tested: Migration script executed, all 10 prompts inserted successfully
2026-01-18 15:48:53 +08:00
66255368b7
feat(admin): Add user management and upgrade to module permission system
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Features - User Management (Phase 4.1):
- Database: Add user_modules table for fine-grained module permissions
- Database: Add 4 user permissions (view/create/edit/delete) to role_permissions
- Backend: UserService (780 lines) - CRUD with tenant isolation
- Backend: UserController + UserRoutes (648 lines) - 13 API endpoints
- Backend: Batch import users from Excel
- Frontend: UserListPage (412 lines) - list/filter/search/pagination
- Frontend: UserFormPage (341 lines) - create/edit with module config
- Frontend: UserDetailPage (393 lines) - details/tenant/module management
- Frontend: 3 modal components (592 lines) - import/assign/configure
- API: GET/POST/PUT/DELETE /api/admin/users/* endpoints
Architecture Upgrade - Module Permission System:
- Backend: Add getUserModules() method in auth.service
- Backend: Login API returns modules array in user object
- Frontend: AuthContext adds hasModule() method
- Frontend: Navigation filters modules based on user.modules
- Frontend: RouteGuard checks requiredModule instead of requiredVersion
- Frontend: Remove deprecated version-based permission system
- UX: Only show accessible modules in navigation (clean UI)
- UX: Smart redirect after login (avoid 403 for regular users)
Fixes:
- Fix UTF-8 encoding corruption in ~100 docs files
- Fix pageSize type conversion in userService (String to Number)
- Fix authUser undefined error in TopNavigation
- Fix login redirect logic with role-based access check
- Update Git commit guidelines v1.2 with UTF-8 safety rules
Database Changes:
- CREATE TABLE user_modules (user_id, tenant_id, module_code, is_enabled)
- ADD UNIQUE CONSTRAINT (user_id, tenant_id, module_code)
- INSERT 4 permissions + role assignments
- UPDATE PUBLIC tenant with 8 module subscriptions
Technical:
- Backend: 5 new files (~2400 lines)
- Frontend: 10 new files (~2500 lines)
- Docs: 1 development record + 2 status updates + 1 guideline update
- Total: ~4900 lines of code
Status: User management 100% complete, module permission system operational
2026-01-16 13:42:10 +08:00
1b53ab9d52
feat(aia): Complete AIA V2.0 with universal streaming capabilities
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Major Changes:
- Add StreamingService with OpenAI Compatible format
- Upgrade Chat component V2 with Ant Design X integration
- Implement AIA module with 12 intelligent agents
- Update API routes to unified /api/v1 prefix
- Update system documentation
Backend (~1300 lines):
- common/streaming: OpenAI Compatible adapter
- modules/aia: 12 agents, conversation service, streaming integration
- Update route versions (RVW, PKB to v1)
Frontend (~3500 lines):
- modules/aia: AgentHub + ChatWorkspace (100% prototype restoration)
- shared/Chat: AIStreamChat, ThinkingBlock, useAIStream Hook
- Update API endpoints to v1
Documentation:
- AIA module status guide
- Universal capabilities catalog
- System overview updates
- All module documentation sync
Tested: Stream response verified, authentication working
Status: AIA V2.0 core completed (85%)
2026-01-14 19:15:01 +08:00
4ed67a8846
fix(admin): Fix Prompt management list not showing version info and add debug diagnostics
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Summary:
- Fix Prompt list API response schema missing activeVersion and draftVersion fields
- Fastify was filtering out undefined schema fields, causing version columns to show empty
- Add detailed diagnostic logging for Prompt debug mode troubleshooting
- Verify debug mode works correctly (DRAFT version is used when debug enabled)
Changes:
- backend/src/common/prompt/prompt.routes.ts: Add activeVersion and draftVersion to response schema
- backend/src/common/prompt/prompt.service.ts: Add diagnostic logs for setDebugMode and get methods
- PKB module: Various authentication and document handling fixes from previous session
Tested: Debug mode verified working - v2 DRAFT version correctly loaded when debug enabled
2026-01-13 22:22:10 +08:00
4088275290
fix(pkb): fix create KB and upload issues - remove simulated upload, fix department mapping, add upload modal
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Fixed issues:
- Remove simulateUpload function from DashboardPage Step 3
- Map department to description field when creating KB
- Add upload modal in WorkspacePage knowledge assets tab
- Fix DocumentUpload import path (../../stores to ../stores)
Known issue: Dify API validation error during document upload (file uploaded but DB record failed, needs investigation)
Testing: KB creation works, upload dialog opens correctly
2026-01-13 13:17:20 +08:00
5523ef36ea
feat(admin): Complete Phase 3.5.1-3.5.4 Prompt Management System (83%)
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Summary:
- Implement Prompt management infrastructure and core services
- Build admin portal frontend with light theme
- Integrate CodeMirror 6 editor for non-technical users
Phase 3.5.1: Infrastructure Setup
- Create capability_schema for Prompt storage
- Add prompt_templates and prompt_versions tables
- Add prompt:view/edit/debug/publish permissions
- Migrate RVW prompts to database (RVW_EDITORIAL, RVW_METHODOLOGY)
Phase 3.5.2: PromptService Core
- Implement gray preview logic (DRAFT for debuggers, ACTIVE for users)
- Module-level debug control (setDebugMode)
- Handlebars template rendering
- Variable extraction and validation (extractVariables, validateVariables)
- Three-level disaster recovery (database -> cache -> hardcoded fallback)
Phase 3.5.3: Management API
- 8 RESTful endpoints (/api/admin/prompts/*)
- Permission control (PROMPT_ENGINEER can edit, SUPER_ADMIN can publish)
Phase 3.5.4: Frontend Management UI
- Build admin portal architecture (AdminLayout, OrgLayout)
- Add route system (/admin/*, /org/*)
- Implement PromptListPage (filter, search, debug switch)
- Implement PromptEditor (CodeMirror 6 simplified for clinical users)
- Implement PromptEditorPage (edit, save, publish, test, version history)
Technical Details:
- Backend: 6 files, ~2044 lines (prompt.service.ts 596 lines)
- Frontend: 9 files, ~1735 lines (PromptEditorPage.tsx 399 lines)
- CodeMirror 6: Line numbers, auto-wrap, variable highlight, search, undo/redo
- Chinese-friendly: 15px font, 1.8 line-height, system fonts
Next Step: Phase 3.5.5 - Integrate RVW module with PromptService
Tested: Backend API tests passed (8/8), Frontend pending user testing
Status: Ready for Phase 3.5.5 RVW integration
2026-01-11 21:25:16 +08:00
