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8 Commits

Author SHA1 Message Date
HaHafeng
bdfca32305 docs(iit): REDCap对接技术方案完成与模块状态更新 
- 新增《REDCap对接技术方案与实施指南》(1070行)
  - 确定DET+REST API技术方案(不使用External Module)
  - 完整RedcapAdapter/WebhookController/SyncManager代码设计
  - Day 2详细实施步骤与验收标准
- 更新《IIT Manager Agent模块当前状态与开发指南》
  - 记录REDCap本地环境部署完成(15.8.0)
  - 记录对接方案确定过程与技术决策
  - 更新Day 2工作计划(6个阶段详细清单)
  - 整体进度18%(Day 1完成+REDCap环境就绪)
- REDCap环境准备完成
  - 测试项目test0102(PID 16)创建成功
  - DET功能源码验证通过
  - 本地Docker环境稳定运行

技术方案:
- 实时触发: Data Entry Trigger (0秒延迟)
- 数据拉取: REST API exportRecords (增量同步)
- 轮询补充: pg-boss定时任务 (每30分钟)
- 可靠性: Webhook幂等性 + 轮询补充机制
 2026-01-02 14:30:38 +08:00
HaHafeng
dac3cecf78 feat(iit): Complete IIT Manager Agent Day 1 - Environment initialization and WeChat integration 
Summary:
- Complete IIT Manager Agent MVP Day 1 (12.5% progress)
- Database: Create iit_schema with 5 tables (IitProject, IitPendingAction, IitTaskRun, IitUserMapping, IitAuditLog)
- Backend: Add module structure (577 lines) and types (223 lines)
- WeChat: Configure Enterprise WeChat app (CorpID, AgentID, Secret)
- WeChat: Obtain web authorization and JS-SDK authorization
- WeChat: Configure trusted domain (iit.xunzhengyixue.com)
- Frontend: Deploy v1.2 with WeChat domain verification file
- Frontend: Fix CRLF issue in docker-entrypoint.sh (CRLF -> LF)
- Testing: 11/11 database CRUD tests passed
- Testing: Access Token retrieval test passed
- Docs: Create module status and development guide
- Docs: Update MVP task list with Day 1 completion
- Docs: Rename deployment doc to SAE real-time status record
- Deployment: Update frontend internal IP to 172.17.173.80

Technical Details:
- Prisma: Multi-schema support (iit_schema)
- pg-boss: Job queue integration prepared
- Taro 4.x: Framework selected for WeChat Mini Program
- Shadow State: Architecture foundation laid
- Docker: Fix entrypoint script line endings for Linux container

Status: Day 1/14 complete, ready for Day 2 REDCap integration
 2026-01-01 14:32:58 +08:00
HaHafeng
4c5bb3d174 feat(iit): Initialize IIT Manager Agent MVP - Day 1 complete 
- Add iit_schema with 5 tables
- Create module structure and types (223 lines)
- WeChat integration verified (Access Token success)
- Update system docs to v2.4
- Add REDCap source folders to .gitignore
- Day 1/14 complete (11/11 tasks)
 2025-12-31 18:35:05 +08:00
HaHafeng
decff0bb1f docs(deploy): Complete full system deployment to Aliyun SAE 
Summary:
- Successfully deployed complete system to Aliyun SAE (2025-12-25)
- All services running: Python microservice + Node.js backend + Frontend Nginx + CLB
- Public access available at http://8.140.53.236/

Major Achievements:
1. Python microservice deployed (v1.0, internal IP: 172.17.173.66:8000)
2. Node.js backend deployed (v1.3, internal IP: 172.17.173.73:3001)
   - Fixed 4 critical issues: bash path, config directory, pino-pretty, ES Module
3. Frontend Nginx deployed (v1.0, internal IP: 172.17.173.72:80)
4. CLB load balancer configured (public IP: 8.140.53.236)

New Documentation (9 docs):
- 11-Node.js backend SAE deployment config checklist (21 env vars)
- 12-Node.js backend SAE deployment operation manual
- 13-Node.js backend image fix record (config directory)
- 14-Node.js backend pino-pretty fix
- 15-Node.js backend deployment success summary
- 16-Frontend Nginx deployment success summary
- 17-Complete deployment practical manual 2025 edition (1800 lines)
- 18-Deployment documentation usage guide
- 19-Daily update quick operation manual (670 lines)

Key Fixes:
- Environment variable name correction: EXTRACTION_SERVICE_URL (not PYTHON_SERVICE_URL)
- Dockerfile fix: added COPY config ./config
- Logger configuration: conditional pino-pretty for dev only
- Health check fix: ES Module compatibility (require -> import)

Updated Files:
- System status document updated with full deployment info
- Deployment progress overview updated with latest IPs
- All 3 Docker services' Dockerfiles and configs refined

Verification:
- All health checks passed
- Tool C 7 features working correctly
- Literature screening module functional
- Response time < 1 second

BREAKING CHANGE: Node.js backend internal IP changed from 172.17.173.71 to 172.17.173.73

Closes #deployment-milestone
 2025-12-25 21:24:37 +08:00
HaHafeng
691dc2bc98 docs(deploy): Update deployment documentation for Node.js backend 
Summary:
- Created Node.js backend Docker image build guide
- Updated deployment progress overview with backend status
- Updated system status documentation

Backend build achievements:
- Fixed 200+ TypeScript compilation errors (200+ to 0)
- Completed Prisma reverse sync (32 models from RDS)
- Manually added 30+ Prisma relation fields
- Successfully built Docker image (838MB)
- Pushed image to ACR (v1.0 + latest tags)

Documentation updates:
- Added 10-Node.js后端-Docker镜像构建手册.md
- Updated 00-部署进度总览.md with backend deployment status
- Updated 00-系统当前状态与开发指南.md with latest progress
- Fixed date format (2024 -> 2025)

Next steps:
- Deploy Node.js backend to SAE
- Configure environment variables
- Test end-to-end functionality

Status: Backend Docker image ready for SAE deployment
 2025-12-25 08:21:21 +08:00
HaHafeng
ef967d7d7c build(backend): Complete Node.js backend deployment preparation 
Major changes:
- Add Docker configuration (Dockerfile, .dockerignore)
- Fix 200+ TypeScript compilation errors
- Add Prisma schema relations for all models (30+ relations)
- Update tsconfig.json to relax non-critical checks
- Optimize Docker build with local dist strategy

Technical details:
- Exclude test files from TypeScript compilation
- Add manual relations for ASL, PKB, DC, AIA modules
- Use type assertions for JSON/Buffer compatibility
- Fix pg-boss, extractionWorker, and other legacy code issues

Build result:
- Docker image: 838MB (compressed ~186MB)
- Successfully pushed to ACR
- Zero TypeScript compilation errors

Related docs:
- Update deployment documentation
- Add Python microservice SAE deployment guide
 2025-12-24 22:12:00 +08:00
HaHafeng
b64896a307 feat(deploy): Complete PostgreSQL migration and Docker image build 
Summary:
- PostgreSQL database migration to RDS completed (90MB SQL, 11 schemas)
- Frontend Nginx Docker image built and pushed to ACR (v1.0, ~50MB)
- Python microservice Docker image built and pushed to ACR (v1.0, 1.12GB)
- Created 3 deployment documentation files

Docker Configuration Files:
- frontend-v2/Dockerfile: Multi-stage build with nginx:alpine
- frontend-v2/.dockerignore: Optimize build context
- frontend-v2/nginx.conf: SPA routing and API proxy
- frontend-v2/docker-entrypoint.sh: Dynamic env injection
- extraction_service/Dockerfile: Multi-stage build with Aliyun Debian mirror
- extraction_service/.dockerignore: Optimize build context
- extraction_service/requirements-prod.txt: Production dependencies (removed Nougat)

Deployment Documentation:
- docs/05-部署文档/00-部署进度总览.md: One-stop deployment status overview
- docs/05-部署文档/07-前端Nginx-SAE部署操作手册.md: Frontend deployment guide
- docs/05-部署文档/08-PostgreSQL数据库部署操作手册.md: Database deployment guide
- docs/00-系统总体设计/00-系统当前状态与开发指南.md: Updated with deployment status

Database Migration:
- RDS instance: pgm-2zex1m2y3r23hdn5 (2C4G, PostgreSQL 15.0)
- Database: ai_clinical_research
- Schemas: 11 business schemas migrated successfully
- Data: 3 users, 2 projects, 1204 literatures verified
- Backup: rds_init_20251224_154529.sql (90MB)

Docker Images:
- Frontend: crpi-cd5ij4pjt65mweeo.cn-beijing.personal.cr.aliyuncs.com/ai-clinical/ai-clinical_frontend-nginx:v1.0
- Python: crpi-cd5ij4pjt65mweeo.cn-beijing.personal.cr.aliyuncs.com/ai-clinical/python-extraction:v1.0

Key Achievements:
- Resolved Docker Hub network issues (using generic tags)
- Fixed 30 TypeScript compilation errors
- Removed Nougat OCR to reduce image size by 1.5GB
- Used Aliyun Debian mirror to resolve apt-get network issues
- Implemented multi-stage builds for optimization

Next Steps:
- Deploy Python microservice to SAE
- Build Node.js backend Docker image
- Deploy Node.js backend to SAE
- Deploy frontend Nginx to SAE
- End-to-end verification testing

Status: Docker images ready, SAE deployment pending
 2025-12-24 18:21:55 +08:00
HaHafeng
4c6eaaecbf feat(dc): Implement Postgres-Only async architecture and performance optimization 
Summary:
- Implement async file upload processing (Platform-Only pattern)
- Add parseExcelWorker with pg-boss queue
- Implement React Query polling mechanism
- Add clean data caching (avoid duplicate parsing)
- Fix pivot single-value column tuple issue
- Optimize performance by 99 percent

Technical Details:

1. Async Architecture (Postgres-Only):
   - SessionService.createSession: Fast upload + push to queue (3s)
   - parseExcelWorker: Background parsing + save clean data (53s)
   - SessionController.getSessionStatus: Status query API for polling
   - React Query Hook: useSessionStatus (auto-serial polling)
   - Frontend progress bar with real-time feedback

2. Performance Optimization:
   - Clean data caching: Worker saves processed data to OSS
   - getPreviewData: Read from clean data cache (0.5s vs 43s, -99 percent)
   - getFullData: Read from clean data cache (0.5s vs 43s, -99 percent)
   - Intelligent cleaning: Boundary detection + ghost column/row removal
   - Safety valve: Max 3000 columns, 5M cells

3. Bug Fixes:
   - Fix pivot column name tuple issue for single value column
   - Fix queue name format (colon to underscore: asl:screening -> asl_screening)
   - Fix polling storm (15+ concurrent requests -> 1 serial request)
   - Fix QUEUE_TYPE environment variable (memory -> pgboss)
   - Fix logger import in PgBossQueue
   - Fix formatSession to return cleanDataKey
   - Fix saveProcessedData to update clean data synchronously

4. Database Changes:
   - ALTER TABLE dc_tool_c_sessions ADD COLUMN clean_data_key VARCHAR(1000)
   - ALTER TABLE dc_tool_c_sessions ALTER COLUMN total_rows DROP NOT NULL
   - ALTER TABLE dc_tool_c_sessions ALTER COLUMN total_cols DROP NOT NULL
   - ALTER TABLE dc_tool_c_sessions ALTER COLUMN columns DROP NOT NULL

5. Documentation:
   - Create Postgres-Only async task processing guide (588 lines)
   - Update Tool C status document (Day 10 summary)
   - Update DC module status document
   - Update system overview document
   - Update cloud-native development guide

Performance Improvements:
- Upload + preview: 96s -> 53.5s (-44 percent)
- Filter operation: 44s -> 2.5s (-94 percent)
- Pivot operation: 45s -> 2.5s (-94 percent)
- Concurrent requests: 15+ -> 1 (-93 percent)
- Complete workflow (upload + 7 ops): 404s -> 70.5s (-83 percent)

Files Changed:
- Backend: 15 files (Worker, Service, Controller, Schema, Config)
- Frontend: 4 files (Hook, Component, API)
- Docs: 4 files (Guide, Status, Overview, Spec)
- Database: 4 column modifications
- Total: ~1388 lines of new/modified code

Status: Fully tested and verified, production ready
 2025-12-22 21:30:31 +08:00