HaHafeng
205932bb3f
Tool 4 - SR Chart Generator: - PRISMA 2020 flow diagram with Chinese/English toggle (SVG) - Baseline characteristics table (Table 1) - Dual data source: project pipeline API + Excel upload - SVG/PNG export support - Backend: ChartingService with Prisma aggregation - Frontend: PrismaFlowDiagram, BaselineTable, DataSourceSelector Tool 5 - Meta Analysis Engine: - 3 data types: HR (metagen), dichotomous (metabin), continuous (metacont) - Random and fixed effects models - Multiple effect measures: HR / OR / RR - Forest plot + funnel plot (base64 PNG from R) - Heterogeneity statistics: I2, Q, p-value, Tau2 - Data input via Excel upload or project pipeline - R Docker image updated with meta package (13 tools total) - E2E test: 36/36 passed - Key fix: exp() back-transformation for log-scale ratio measures Also includes: - IIT CRA Agent V3.0 routing and AI chat page integration - Updated ASL module status guide (v2.3) - Updated system status guide (v6.3) - Updated R statistics engine guide (v1.4) Tested: Frontend renders correctly, backend APIs functional, E2E tests passed Made-with: Cursor
71 lines
1.5 KiB
Docker
71 lines
1.5 KiB
Docker
FROM rocker/r-ver:4.3
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LABEL maintainer="dev-team@aiclinicalresearch.com"
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LABEL version="1.0.1"
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LABEL description="SSA-Pro R Statistics Service"
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# 安装系统依赖（包括 R 包编译所需的库）
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RUN apt-get update && apt-get install -y \
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libcurl4-openssl-dev \
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libssl-dev \
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libxml2-dev \
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libsodium-dev \
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zlib1g-dev \
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libnlopt-dev \
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liblapack-dev \
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libblas-dev \
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gfortran \
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pkg-config \
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cmake \
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curl \
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&& rm -rf /var/lib/apt/lists/*
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# 直接安装 R 包（简化方案，避免 renv 版本冲突）
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RUN R -e "install.packages(c( \
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'plumber', \
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'jsonlite', \
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'ggplot2', \
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'glue', \
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'dplyr', \
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'tidyr', \
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'base64enc', \
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'yaml', \
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'car', \
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'httr', \
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'scales', \
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'gridExtra', \
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'gtsummary', \
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'gt', \
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'broom', \
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'meta' \
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), repos='https://cloud.r-project.org/', Ncpus=2)"
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# ===== 安全加固：创建非特权用户 =====
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RUN useradd -m -s /bin/bash appuser
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WORKDIR /app
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# 复制应用代码
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COPY plumber.R plumber.R
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COPY utils/ utils/
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COPY tools/ tools/
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COPY tests/ tests/
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# 设置目录权限
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RUN chown -R appuser:appuser /app
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# ===== 切换到非特权用户 =====
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USER appuser
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EXPOSE 8080
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# 环境变量
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ENV DEV_MODE="false"
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# 健康检查
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HEALTHCHECK --interval=30s --timeout=10s --start-period=5s --retries=3 \
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CMD curl -f http://localhost:8080/health || exit 1
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# 启动服务（不清理 /tmp，避免权限问题）
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CMD ["R", "-e", "plumber::plumb('plumber.R')$run(host='0.0.0.0', port=8080)"]
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