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AIclinicalresearch/python-microservice/operations/recode.py
HaHafeng 75ceeb0653 hotfix(dc/tool-c): Fix compute formula validation and binning NaN serialization
Critical fixes:
1. Compute column: Add Chinese comma support in formula validation
   - Problem: Formula with Chinese comma failed validation
   - Fix: Add Chinese comma character to allowed_chars regex
   - Example: Support formulas like 'col1(kg)+ col2,col3'

2. Binning operation: Fix NaN serialization error
   - Problem: 'Out of range float values are not JSON compliant: nan'
   - Fix: Enhanced NaN/inf handling in binning endpoint
   - Added np.inf/-np.inf replacement before JSON serialization
   - Added manual JSON serialization with NaN->null conversion

3. Enhanced all operation endpoints for consistency
   - Updated conditional, dropna endpoints with same NaN/inf handling
   - Ensures all operations return JSON-compliant data

Modified files:
- extraction_service/operations/compute.py: Add Chinese comma to regex
- extraction_service/main.py: Enhanced NaN handling in binning/conditional/dropna

Status: Hotfix complete, ready for testing
2025-12-09 08:45:27 +08:00

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"""
数值映射(重编码)操作
将分类变量的原始值映射为新值男→1女→2
"""
import pandas as pd
from typing import Dict, Any, Optional
def apply_recode(
df: pd.DataFrame,
column: str,
mapping: Dict[Any, Any],
create_new_column: bool = True,
new_column_name: Optional[str] = None
) -> pd.DataFrame:
"""
应用数值映射
Args:
df: 输入数据框
column: 要重编码的列名
mapping: 映射字典,如 {'': 1, '': 2}
create_new_column: 是否创建新列True或覆盖原列False
new_column_name: 新列名create_new_column=True时使用
Returns:
重编码后的数据框
Examples:
>>> df = pd.DataFrame({'性别': ['', '', '', '']})
>>> mapping = {'': 1, '': 2}
>>> result = apply_recode(df, '性别', mapping, True, '性别_编码')
>>> result['性别_编码'].tolist()
[1, 2, 1, 2]
"""
if df.empty:
return df
# 验证列是否存在
if column not in df.columns:
raise KeyError(f"'{column}' 不存在")
if not mapping:
raise ValueError('映射字典不能为空')
# 确定目标列名
if create_new_column:
target_column = new_column_name or f'{column}_编码'
else:
target_column = column
# 创建结果数据框(避免修改原数据)
result = df.copy()
# 应用映射
result[target_column] = result[column].map(mapping)
# 统计结果
mapped_count = result[target_column].notna().sum()
unmapped_count = result[target_column].isna().sum()
total_count = len(result)
print(f'映射完成: {mapped_count} 个值成功映射')
if unmapped_count > 0:
print(f'警告: {unmapped_count} 个值未找到对应映射')
# 找出未映射的唯一值
unmapped_mask = result[target_column].isna()
unmapped_values = result.loc[unmapped_mask, column].unique()
print(f'未映射的值: {list(unmapped_values)[:10]}') # 最多显示10个
# 映射成功率
success_rate = (mapped_count / total_count * 100) if total_count > 0 else 0
print(f'映射成功率: {success_rate:.1f}%')
return result