HaHafeng
dfc0fe0b9a
Summary: - Migrate PostgreSQL to pgvector/pgvector:pg15 Docker image - Successfully install and verify pgvector 0.8.1 extension - Create comprehensive Dify-to-pgvector migration plan - Update PKB module documentation with pgvector status - Update system documentation with pgvector integration Key changes: - docker-compose.yml: Switch to pgvector/pgvector:pg15 image - Add EkbDocument and EkbChunk data model design - Design R-C-R-G hybrid retrieval architecture - Add clinical data JSONB fields (pico, studyDesign, regimen, safety, criteria, endpoints) - Create detailed 10-day implementation roadmap Documentation updates: - PKB module status: pgvector RAG infrastructure ready - System status: pgvector 0.8.1 integrated - New: Dify replacement development plan (01-Dify替换为pgvector开发计划.md) - New: Enterprise medical knowledge base solution V2 Tested: PostgreSQL with pgvector verified, frontend and backend functionality confirmed
152 lines
3.3 KiB
YAML
152 lines
3.3 KiB
YAML
# REDCap Docker Compose 配置 - 开发环境
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# 版本：v1.0
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# 日期：2026-01-01
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# 用途：本地开发环境（包含phpMyAdmin调试工具）
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# 生产环境请使用：docker-compose.prod.yml
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version: '3.8'
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services:
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# ========== MySQL 8.0 数据库 ==========
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redcap-db:
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image: mysql:8.0
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container_name: redcap-mysql
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restart: unless-stopped
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environment:
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MYSQL_ROOT_PASSWORD: ${MYSQL_ROOT_PASSWORD}
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MYSQL_DATABASE: ${MYSQL_DATABASE}
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MYSQL_USER: ${MYSQL_USER}
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MYSQL_PASSWORD: ${MYSQL_PASSWORD}
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volumes:
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# 数据持久化（Docker命名卷）
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- redcap-db-data:/var/lib/mysql
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ports:
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# 暴露端口（可选，调试用）
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- "3306:3306"
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networks:
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- redcap-network
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command: --default-authentication-plugin=mysql_native_password
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healthcheck:
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test: ["CMD", "mysqladmin", "ping", "-h", "localhost", "-u", "root", "-p${MYSQL_ROOT_PASSWORD}"]
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interval: 10s
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timeout: 5s
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retries: 5
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# ========== REDCap Web服务 (Apache + PHP 8.1 + REDCap) ==========
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redcap-web:
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build:
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context: .
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dockerfile: Dockerfile.redcap
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container_name: redcap-apache
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restart: unless-stopped
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ports:
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- "8080:80"
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volumes:
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# REDCap源代码（只读）
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- ../redcap15.8.0/redcap:/var/www/html/redcap:ro
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# 配置文件
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- ./config/apache/redcap.conf:/etc/apache2/sites-available/000-default.conf:ro
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- ./config/php/php.ini:/usr/local/etc/php/php.ini:ro
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- ./config/database.php:/var/www/html/redcap/database.php:ro
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# 持久化数据（可读写）
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- redcap-edocs:/var/www/html/redcap/edocs
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- redcap-modules:/var/www/html/redcap/modules
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- redcap-temp:/var/www/html/redcap/temp
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environment:
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# 数据库连接信息
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REDCAP_DB_HOST: redcap-db
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REDCAP_DB_PORT: 3306
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REDCAP_DB_NAME: ${MYSQL_DATABASE}
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REDCAP_DB_USER: ${MYSQL_USER}
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REDCAP_DB_PASS: ${MYSQL_PASSWORD}
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# PHP配置
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TZ: Asia/Shanghai
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networks:
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- redcap-network
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depends_on:
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redcap-db:
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condition: service_healthy
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healthcheck:
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test: ["CMD", "curl", "-f", "http://localhost/"]
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interval: 30s
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timeout: 10s
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retries: 3
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# ========== phpMyAdmin (可选，仅开发环境) ==========
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phpmyadmin:
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image: phpmyadmin/phpmyadmin:latest
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container_name: redcap-phpmyadmin
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restart: unless-stopped
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environment:
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PMA_HOST: redcap-db
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PMA_PORT: 3306
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PMA_USER: root
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PMA_PASSWORD: ${MYSQL_ROOT_PASSWORD}
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UPLOAD_LIMIT: 50M
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ports:
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- "8081:80"
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networks:
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- redcap-network
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depends_on:
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- redcap-db
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# 注意：生产环境应移除此服务（安全考虑）
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# ========== 网络配置 ==========
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networks:
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redcap-network:
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driver: bridge
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name: redcap-network
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# ========== 数据卷配置 ==========
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volumes:
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# MySQL数据（持久化）
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redcap-db-data:
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name: redcap-db-data
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driver: local
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# REDCap上传文件（持久化）
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redcap-edocs:
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name: redcap-edocs
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driver: local
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# External Modules（持久化）
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redcap-modules:
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name: redcap-modules
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driver: local
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# 临时文件（可定期清理）
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redcap-temp:
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name: redcap-temp
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driver: local
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