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6124c7abc6
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docs(platform): Add database documentation system and restructure deployment docs
Completed:
- Add 6 core database documents (docs/01-平台基础层/07-数据库/)
Architecture overview, migration history, environment comparison,
tech debt tracking, seed data management, PostgreSQL extensions
- Restructure deployment docs: archive 20 legacy files to _archive-2025/
- Create unified daily operations manual (01-日常更新操作手册.md)
- Add pending deployment change tracker (03-待部署变更清单.md)
- Update database development standard to v3.0 (three iron rules)
- Fix Prisma schema type drift: align @db.* annotations with actual DB
IIT: UUID/Timestamptz(6), SSA: Timestamp(6)/VarChar(20/50/100)
- Add migration: 20260227_align_schema_with_db_types (idempotent ALTER)
- Add Cursor Rule for auto-reminding deployment change documentation
- Update system status guide v6.4 with deployment and DB doc references
- Add architecture consultation docs (Prisma guide, SAE deployment guide)
Technical details:
- Manual migration due to shadow DB limitation (TD-001 in tech debt)
- Deployment docs reduced from 20+ scattered files to 3 core documents
- Cursor Rule triggers on schema.prisma, package.json, Dockerfile changes
Made-with: Cursor
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2026-02-27 14:35:25 +08:00 |
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31b0433195
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docs(iit): Add CRA Agent V3.0 development plan and update module status guide
V3.0 Plan:
- Finalize CRA Agent V3.0 development plan (replace CRA positioning)
- Add unified CRA QC platform PRD
- Add HTML UI prototype (dashboard, AI stream, eQuery, reports)
- Architecture: report-driven + LLM Tool Use + 4 semantic tools
Module Status Update:
- Update architecture from dual-brain V2.9.1 to V3.0 Tool Use
- Update DB schema inventory (5 tables -> 18 tables)
- Update code stats (577 lines -> 15,000+ lines / 61 files)
- Update next steps to V3.0 P0 roadmap
- Archive old phase plans (ReAct engine, IntentService)
- Add V3.0 document references (plan, PRD, prototype)
Co-authored-by: Cursor <cursoragent@cursor.com>
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2026-02-25 22:04:00 +08:00 |
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371fa53956
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docs(asl): Upgrade Tool 3 architecture from Fan-out to Scatter+Aggregator (v2.0)
Architecture transformation:
- Replace Fan-out (Manager->Child->Last Child Wins) with Scatter+Aggregator pattern
- API layer directly dispatches N independent jobs (no Manager)
- Worker only writes its own Result row, never touches Task table (zero row-lock)
- Aggregator polls groupBy for completion + zombie cleanup (replaces Sweeper)
- Reduce red lines from 13 to 9, eliminate distributed complexity
Documents updated (10 files):
- 08-Tool3 main architecture doc: v2.0 rewrite (schema, Task 2.3/2.4, red lines, risks)
- 08d-Code patterns: rewrite sections 4.1-4.6 (API dispatch, SingleWorker, Aggregator)
- 08a-M1 sprint: rewrite M1-3 core (Worker+Aggregator), red lines, acceptance criteria
- 08b-M2 sprint: simplify SSE (NOTIFY/LISTEN downgraded to P2 optional)
- 08c-M3 sprint: milestone table wording update
- New: Scatter+Polling Aggregator pattern guide v1.1 (Level 2 cookbook)
- New: V2.0 architecture deep review and gap-fix report
- Updated: ASL module status, system status, capability layer index
Co-authored-by: Cursor <cursoragent@cursor.com>
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2026-02-24 22:11:09 +08:00 |
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85fda830c2
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feat(ssa): Complete Phase V-A editable analysis plan variables
Features:
- Add editable variable selection in workflow plan (SingleVarSelect + MultiVarTags)
- Implement 3-layer flexible interception (warning bar + icon + blocking dialog)
- Add tool_param_constraints.json for 12 statistical tools parameter validation
- Add PATCH /workflow/:id/params API with Zod structural validation
- Implement synchronous parameter sync before execution (Promise chaining)
- Fix LLM hallucination by strict system prompt constraints
- Fix DynamicReport object-based rows compatibility (R baseline_table)
- Fix Word export row.map error with same normalization logic
- Restore inferGroupingVar for smart default variable selection
- Add ReactMarkdown rendering in SSAChatPane
- Update SSA module status document to v3.5
Modified files:
- backend: workflow.routes, ChatHandlerService, SystemPromptService, FlowTemplateService
- frontend: WorkflowTimeline, SSAWorkspacePane, DynamicReport, SSAChatPane, ssaStore, ssa.css
- config: tool_param_constraints.json (new)
- docs: SSA status doc, team review reports
Tested: Cohort study end-to-end execution + report export verified
Co-authored-by: Cursor <cursoragent@cursor.com>
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2026-02-24 13:08:29 +08:00 |
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8f06d4f929
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feat(asl): Complete Deep Research V2.0 core development
Backend:
- Add SSE streaming client (unifuncsSseClient) replacing async polling
- Add paragraph-based reasoning parser with mergeConsecutiveThinking
- Add requirement expansion service (DeepSeek-V3 PICOS+MeSH)
- Add Word export service with Pandoc, inline hyperlinks, reference link expansion
- Add deep research V2 worker with 2s log flush and Chinese source prompt
- Add 5 curated data sources config (PubMed/ClinicalTrials/Cochrane/CNKI/MedJournals)
- Add 4 API endpoints (generate-requirement/tasks/task-status/export-word)
- Update Prisma schema with 6 new V2.0 fields on AslResearchTask
- Add DB migration for V2.0 fields
- Simplify ASL_DEEP_RESEARCH_EXPANSION prompt (remove strategy section)
Frontend:
- Add waterfall-flow DeepResearchPage (phase 0-4 progressive reveal)
- Add LandingView, SetupPanel, StrategyConfirm, AgentTerminal, ResultsView
- Add react-markdown + remark-gfm for report rendering
- Add custom link component showing visible URLs after references
- Add useDeepResearchTask polling hook
- Add deep research TypeScript types
Tests:
- Add E2E test, smoke test, and Chinese data source test scripts
Docs:
- Update ASL module status (v2.0 - core features complete)
- Update system status (v6.1 - ASL V2.0 milestone)
- Update Unifuncs DeepSearch API guide (v2.0 - SSE mode + Chinese source results)
- Update module auth specification (test script guidelines)
- Update V2.0 development plan
Co-authored-by: Cursor <cursoragent@cursor.com>
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2026-02-23 13:21:52 +08:00 |
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bf10dec4c8
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docs(ssa): Complete intelligent dialogue and tool system architecture design
Architecture Design:
- Add intent recognition and dialogue architecture design (Intent Router + DataContext)
- Add tool system planning (4-layer 7-tool fusion solution: READ/INTERACT/THINK/ACT)
- Add 4-layer 7-tool implementation mechanism details (Conversation Layer LLM + Node.js orchestration)
Development Plan (v1.2):
- Create 6-phase development plan (134h/22 days) for intelligent dialogue system
- Add 8 architectural constraints (C1-C8): no Function Calling, Postgres-Only cache,
streaming output, context guard, Zod dynamic validation
- Correct Session Blackboard to use CacheFactory (Postgres-Only, no Redis)
Status Updates:
- Update SSA module status: QPER complete + dialogue architecture design complete
- Update system-level status: add SSA architecture design milestone
Other:
- R tools minor fixes (chi_square, correlation, logistic_binary, mann_whitney, t_test_paired)
- Frontend AIA chat workspace style adjustment
Co-authored-by: Cursor <cursoragent@cursor.com>
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2026-02-22 10:05:14 +08:00 |
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371e1c069c
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feat(ssa): Complete QPER architecture - Query, Planner, Execute, Reflection layers
Implement the full QPER intelligent analysis pipeline:
- Phase E+: Block-based standardization for all 7 R tools, DynamicReport renderer, Word export enhancement
- Phase Q: LLM intent parsing with dynamic Zod validation against real column names, ClarificationCard component, DataProfile is_id_like tagging
- Phase P: ConfigLoader with Zod schema validation and hot-reload API, DecisionTableService (4-dimension matching), FlowTemplateService with EPV protection, PlannedTrace audit output
- Phase R: ReflectionService with statistical slot injection, sensitivity analysis conflict rules, ConclusionReport with section reveal animation, conclusion caching API, graceful R error classification
End-to-end test: 40/40 passed across two complete analysis scenarios.
Co-authored-by: Cursor <cursoragent@cursor.com>
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2026-02-21 18:15:53 +08:00 |
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49b5c37cb1
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feat(ssa): Complete T-test end-to-end testing with 9 bug fixes - Phase 1 core 85% complete. R service: missing value auto-filter. Backend: error handling, variable matching, dynamic filename. Frontend: module activation, session isolation, error propagation. Full flow verified.
Co-authored-by: Cursor <cursoragent@cursor.com>
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2026-02-19 20:57:00 +08:00 |
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45c7b32dbb
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docs(iit): Add QC system UI and LLM format optimization plan
- Add development plan: 07-QC system UI and LLM format optimization
- Phase 1: PromptBuilder + XML clinical slice format (~5.5h)
- Phase 2: QC cockpit + stat cards + risk heatmap (~9.5h)
- Phase 3: Variable tagging system (~5h)
- Add CRA Agent design document and prototype
- Update module status: design 100%, code 45%
- Update system status: real-time QC complete + plan ready
Co-authored-by: Cursor <cursoragent@cursor.com>
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2026-02-08 09:59:44 +08:00 |
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5db4a7064c
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feat(iit): Implement real-time quality control system
Summary:
- Add 4 new database tables: iit_field_metadata, iit_qc_logs, iit_record_summary, iit_qc_project_stats
- Implement pg-boss debounce mechanism in WebhookController
- Refactor QC Worker for dual output: QC logs + record summary
- Enhance HardRuleEngine to support form-based rule filtering
- Create QcService for QC data queries
- Optimize ChatService with new intents: query_enrollment, query_qc_status
- Add admin batch operations: one-click full QC + one-click full summary
- Create IIT Admin management module: project config, QC rules, user mapping
Status: Code complete, pending end-to-end testing
Co-authored-by: Cursor <cursoragent@cursor.com>
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2026-02-07 21:56:11 +08:00 |
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0c590854b5
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docs(iit): Add IIT Manager Agent V2.9 development plan with multi-agent architecture
Features:
- Add V2.9 enhancements: Cron Skill, User Profiling, Feedback Loop, Multi-Intent Handling
- Create modular development plan documents (database, engines, services, memory, tasks)
- Add V2.5/V2.6/V2.8/V2.9 design documents for architecture evolution
- Add system design white papers and implementation guides
Architecture:
- Dual-Brain Architecture (SOP + ReAct engines)
- Three-layer memory system (Flow Log, Hot Memory, History Book)
- ProfilerService for personalized responses
- SchedulerService with Cron Skill support
Also includes:
- Frontend nginx config updates
- Backend test scripts for WeChat signature
- Database backup files
Co-authored-by: Cursor <cursoragent@cursor.com>
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2026-02-05 22:33:26 +08:00 |
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4b9b90ffb8
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feat(iit): Complete REDCap production deployment on Alibaba Cloud ECS
Summary:
- Deploy REDCap 15.8.0 on ECS with Docker CE 26.1.3
- Configure RDS MySQL 8.0 database (redcap_prod)
- Setup Nginx reverse proxy with HTTPS/SSL
- Domain configured: https://redcap.xunzhengyixue.com/
Documentation:
- Add ECS deployment guide
- Add deployment info record
- Update system status document (v4.5 -> v4.6)
Status: REDCap production environment fully operational
Co-authored-by: Cursor <cursoragent@cursor.com>
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2026-02-02 22:27:05 +08:00 |
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4c2c9b437b
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feat(admin): Add activity logs page and fix AI chat markdown rendering
- Add paginated activity logs API with filters (date, module, action, keyword)
- Add ActivityLogsPage with table, filters, and detail modal
- Add markdown rendering support for AI chat messages
- Remove prototype placeholder content from chat sidebar
Co-authored-by: Cursor <cursoragent@cursor.com>
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2026-02-01 21:04:21 +08:00 |
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57fdc6ef00
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feat(aia): Integrate PromptService for 10 AI agents
Features:
- Migrate 10 agent prompts from hardcoded to database
- Add grayscale preview support (DRAFT/ACTIVE distribution)
- Implement 3-tier fallback (DB -> Cache -> Hardcoded)
- Add version management and rollback capability
Files changed:
- backend/scripts/migrate-aia-prompts.ts (new migration script)
- backend/src/common/prompt/prompt.fallbacks.ts (add AIA fallbacks)
- backend/src/modules/aia/services/agentService.ts (integrate PromptService)
- backend/src/modules/aia/services/conversationService.ts (pass userId)
- backend/src/modules/aia/types/index.ts (fix AgentStage type)
Documentation:
- docs/03-业务模块/AIA-AI智能问答/06-开发记录/2026-01-18-Prompt管理系统集成.md
- docs/02-通用能力层/00-通用能力层清单.md (add FileCard, Prompt management)
- docs/00-系统总体设计/00-系统当前状态与开发指南.md (update to v3.6)
Prompt codes:
- AIA_SCIENTIFIC_QUESTION, AIA_PICO_ANALYSIS, AIA_TOPIC_EVALUATION
- AIA_OUTCOME_DESIGN, AIA_CRF_DESIGN, AIA_SAMPLE_SIZE
- AIA_PROTOCOL_WRITING, AIA_METHODOLOGY_REVIEW
- AIA_PAPER_POLISH, AIA_PAPER_TRANSLATE
Tested: Migration script executed, all 10 prompts inserted successfully
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2026-01-18 15:48:53 +08:00 |
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3d35e9c58b
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feat(aia): Complete AIA V2.0 with universal streaming capabilities
Major Updates:
- Add StreamingService with OpenAI Compatible format (backend/common/streaming)
- Upgrade Chat component V2 with Ant Design X integration
- Implement AIA module with 12 intelligent agents
- Create AgentHub with 100% prototype V11 restoration
- Create ChatWorkspace with streaming response support
- Add ThinkingBlock for deep thinking display
- Add useAIStream Hook for OpenAI Compatible stream handling
Backend Common Capabilities (~400 lines):
- OpenAIStreamAdapter: SSE adapter with OpenAI format
- StreamingService: unified streaming service
- Support content and reasoning_content dual streams
- Deep thinking tag processing (<think>...</think>)
Frontend Common Capabilities (~2000 lines):
- AIStreamChat: modern streaming chat component
- ThinkingBlock: collapsible deep thinking display
- ConversationList: conversation management with grouping
- useAIStream: OpenAI Compatible stream handler Hook
- useConversations: conversation state management Hook
- Modern design styles (Ultramodern theme)
AIA Module Frontend (~1500 lines):
- AgentHub: 12 agent cards with timeline design
- ChatWorkspace: fullscreen immersive chat interface
- AgentCard: theme-colored cards (blue/yellow/teal/purple)
- 5 phases, 12 agents configuration
- Responsive layout (desktop + mobile)
AIA Module Backend (~900 lines):
- agentService: 12 agents config with system prompts
- conversationService: refactored with StreamingService
- attachmentService: file upload skeleton (30k token limit)
- 12 API endpoints with authentication
- Full CRUD for conversations and messages
Documentation:
- AIA module status and development guide
- Universal capabilities catalog (11 services)
- Quick reference card for developers
- System overview updates
Testing:
- Stream response verified (HTTP 200)
- Authentication working correctly
- Auto conversation creation working
- Deep thinking display working
- Message input and send working
Status: Core features completed (85%), attachment and history loading pending
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2026-01-14 19:09:28 +08:00 |
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