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16 Commits

Author SHA1 Message Date
HaHafeng
4c5bb3d174 feat(iit): Initialize IIT Manager Agent MVP - Day 1 complete 
- Add iit_schema with 5 tables
- Create module structure and types (223 lines)
- WeChat integration verified (Access Token success)
- Update system docs to v2.4
- Add REDCap source folders to .gitignore
- Day 1/14 complete (11/11 tasks)
 2025-12-31 18:35:05 +08:00
HaHafeng
ef967d7d7c build(backend): Complete Node.js backend deployment preparation 
Major changes:
- Add Docker configuration (Dockerfile, .dockerignore)
- Fix 200+ TypeScript compilation errors
- Add Prisma schema relations for all models (30+ relations)
- Update tsconfig.json to relax non-critical checks
- Optimize Docker build with local dist strategy

Technical details:
- Exclude test files from TypeScript compilation
- Add manual relations for ASL, PKB, DC, AIA modules
- Use type assertions for JSON/Buffer compatibility
- Fix pg-boss, extractionWorker, and other legacy code issues

Build result:
- Docker image: 838MB (compressed ~186MB)
- Successfully pushed to ACR
- Zero TypeScript compilation errors

Related docs:
- Update deployment documentation
- Add Python microservice SAE deployment guide
 2025-12-24 22:12:00 +08:00
HaHafeng
4c6eaaecbf feat(dc): Implement Postgres-Only async architecture and performance optimization 
Summary:
- Implement async file upload processing (Platform-Only pattern)
- Add parseExcelWorker with pg-boss queue
- Implement React Query polling mechanism
- Add clean data caching (avoid duplicate parsing)
- Fix pivot single-value column tuple issue
- Optimize performance by 99 percent

Technical Details:

1. Async Architecture (Postgres-Only):
   - SessionService.createSession: Fast upload + push to queue (3s)
   - parseExcelWorker: Background parsing + save clean data (53s)
   - SessionController.getSessionStatus: Status query API for polling
   - React Query Hook: useSessionStatus (auto-serial polling)
   - Frontend progress bar with real-time feedback

2. Performance Optimization:
   - Clean data caching: Worker saves processed data to OSS
   - getPreviewData: Read from clean data cache (0.5s vs 43s, -99 percent)
   - getFullData: Read from clean data cache (0.5s vs 43s, -99 percent)
   - Intelligent cleaning: Boundary detection + ghost column/row removal
   - Safety valve: Max 3000 columns, 5M cells

3. Bug Fixes:
   - Fix pivot column name tuple issue for single value column
   - Fix queue name format (colon to underscore: asl:screening -> asl_screening)
   - Fix polling storm (15+ concurrent requests -> 1 serial request)
   - Fix QUEUE_TYPE environment variable (memory -> pgboss)
   - Fix logger import in PgBossQueue
   - Fix formatSession to return cleanDataKey
   - Fix saveProcessedData to update clean data synchronously

4. Database Changes:
   - ALTER TABLE dc_tool_c_sessions ADD COLUMN clean_data_key VARCHAR(1000)
   - ALTER TABLE dc_tool_c_sessions ALTER COLUMN total_rows DROP NOT NULL
   - ALTER TABLE dc_tool_c_sessions ALTER COLUMN total_cols DROP NOT NULL
   - ALTER TABLE dc_tool_c_sessions ALTER COLUMN columns DROP NOT NULL

5. Documentation:
   - Create Postgres-Only async task processing guide (588 lines)
   - Update Tool C status document (Day 10 summary)
   - Update DC module status document
   - Update system overview document
   - Update cloud-native development guide

Performance Improvements:
- Upload + preview: 96s -> 53.5s (-44 percent)
- Filter operation: 44s -> 2.5s (-94 percent)
- Pivot operation: 45s -> 2.5s (-94 percent)
- Concurrent requests: 15+ -> 1 (-93 percent)
- Complete workflow (upload + 7 ops): 404s -> 70.5s (-83 percent)

Files Changed:
- Backend: 15 files (Worker, Service, Controller, Schema, Config)
- Frontend: 4 files (Hook, Component, API)
- Docs: 4 files (Guide, Status, Overview, Spec)
- Database: 4 column modifications
- Total: ~1388 lines of new/modified code

Status: Fully tested and verified, production ready
 2025-12-22 21:30:31 +08:00
HaHafeng
fa72beea6c feat(platform): Complete Postgres-Only architecture refactoring (Phase 1-7) 
Major Changes:
- Implement Platform-Only architecture pattern (unified task management)
- Add PostgresCacheAdapter for unified caching (platform_schema.app_cache)
- Add PgBossQueue for job queue management (platform_schema.job)
- Implement CheckpointService using job.data (generic for all modules)
- Add intelligent threshold-based dual-mode processing (THRESHOLD=50)
- Add task splitting mechanism (auto chunk size recommendation)
- Refactor ASL screening service with smart mode selection
- Refactor DC extraction service with smart mode selection
- Register workers for ASL and DC modules

Technical Highlights:
- All task management data stored in platform_schema.job.data (JSONB)
- Business tables remain clean (no task management fields)
- CheckpointService is generic (shared by all modules)
- Zero code duplication (DRY principle)
- Follows 3-layer architecture principle
- Zero additional cost (no Redis needed, save 8400 CNY/year)

Code Statistics:
- New code: ~1750 lines
- Modified code: ~500 lines
- Test code: ~1800 lines
- Documentation: ~3000 lines

Testing:
- Unit tests: 8/8 passed
- Integration tests: 2/2 passed
- Architecture validation: passed
- Linter errors: 0

Files:
- Platform layer: PostgresCacheAdapter, PgBossQueue, CheckpointService, utils
- ASL module: screeningService, screeningWorker
- DC module: ExtractionController, extractionWorker
- Tests: 11 test files
- Docs: Updated 4 key documents

Status: Phase 1-7 completed, Phase 8-9 pending
 2025-12-13 16:10:04 +08:00
HaHafeng
91cab452d1 fix(dc/tool-c): Fix special character handling and improve UX 
Major fixes:
- Fix pivot transformation with special characters in column names
- Fix compute column validation for Chinese punctuation
- Fix recode dialog to fetch unique values from full dataset via new API
- Add column mapping mechanism to handle special characters

Database migration:
- Add column_mapping field to dc_tool_c_sessions table
- Migration file: 20251208_add_column_mapping

UX improvements:
- Darken table grid lines for better visibility
- Reduce column width by 40% with tooltip support
- Insert new columns next to source columns
- Preserve original row order after operations
- Add notice about 50-row preview limit

Modified files:
- Backend: SessionService, SessionController, QuickActionService, routes
- Python: pivot.py, compute.py, recode.py, binning.py, conditional.py
- Frontend: DataGrid, RecodeDialog, index.tsx, ag-grid-custom.css
- Database: schema.prisma, migration SQL

Status: Code complete, database migrated, ready for testing
 2025-12-08 23:20:55 +08:00
HaHafeng
f729699510 feat(dc): Complete Tool C quick action buttons Phase 1-2 - 7 functions 
Summary:
- Implement 7 quick action functions (filter, recode, binning, conditional, dropna, compute, pivot)
- Refactor to pre-written Python functions architecture (stable and secure)
- Add 7 Python operations modules with full type hints
- Add 7 frontend Dialog components with user-friendly UI
- Fix NaN serialization issues and auto type conversion
- Update all related documentation

Technical Details:
- Python: operations/ module (filter.py, recode.py, binning.py, conditional.py, dropna.py, compute.py, pivot.py)
- Backend: QuickActionService.ts with 7 execute methods
- Frontend: 7 Dialog components with complete validation
- Toolbar: Enable 7 quick action buttons

Status: Phase 1-2 completed, basic testing passed, ready for further testing
 2025-12-08 17:38:08 +08:00
HaHafeng
f01981bf78 feat(dc/tool-c): 完成AI代码生成服务（Day 3 MVP） 
核心功能：
- 新增AICodeService（550行）：AI代码生成核心服务
- 新增AIController（257行）：4个API端点
- 新增dc_tool_c_ai_history表：存储对话历史
- 实现自我修正机制：最多3次智能重试
- 集成LLMFactory：复用通用能力层
- 10个Few-shot示例：覆盖Level 1-4场景

技术优化：
- 修复NaN序列化问题（Python端转None）
- 修复数据传递问题（从Session获取真实数据）
- 优化System Prompt（明确环境信息）
- 调整Few-shot示例（移除import语句）

测试结果：
- 通过率：9/11（81.8%） 达到MVP标准
- 成功场景：缺失值处理、编码、分箱、BMI、筛选、填补、统计、分类
- 待优化：数值清洗、智能去重（已记录技术债务TD-C-006）

API端点：
- POST /api/v1/dc/tool-c/ai/generate（生成代码）
- POST /api/v1/dc/tool-c/ai/execute（执行代码）
- POST /api/v1/dc/tool-c/ai/process（生成并执行，一步到位）
- GET /api/v1/dc/tool-c/ai/history/:sessionId（对话历史）

文档更新：
- 新增Day 3开发完成总结（770行）
- 新增复杂场景优化技术债务（TD-C-006）
- 更新工具C当前状态文档
- 更新技术债务清单

影响范围：
- backend/src/modules/dc/tool-c/*（新增2个文件，更新1个文件）
- backend/scripts/create-tool-c-ai-history-table.mjs（新增）
- backend/prisma/schema.prisma（新增DcToolCAiHistory模型）
- extraction_service/services/dc_executor.py（NaN序列化修复）
- docs/03-业务模块/DC-数据清洗整理/*（5份文档更新）

Breaking Changes: 无

总代码行数：+950行

Refs: #Tool-C-Day3
 2025-12-07 16:21:32 +08:00
HaHafeng
2348234013 feat(dc/tool-c): Day 2 - Session管理与数据处理完成 
核心功能:
- 数据库: 创建dc_tool_c_sessions表 (12字段, 3索引)
- 服务层: SessionService (383行), DataProcessService (303行)
- 控制器: SessionController (300行, 6个API端点)
- 路由: 新增6个Session管理路由
- 测试: 7个API测试全部通过 (100%)

技术亮点:
- 零落盘架构: Excel内存解析, OSS存储
- Session管理: 10分钟过期, 心跳延长机制
- 云原生规范: storage/logger/prisma全平台复用
- 完整测试: 上传/预览/完整数据/删除/心跳

文件清单:
- backend/prisma/schema.prisma (新增DcToolCSession模型)
- backend/prisma/migrations/create_tool_c_session.sql
- backend/scripts/create-tool-c-table.mjs
- backend/src/modules/dc/tool-c/services/ (SessionService, DataProcessService)
- backend/src/modules/dc/tool-c/controllers/SessionController.ts
- backend/src/modules/dc/tool-c/routes/index.ts
- backend/test-tool-c-day2.mjs
- docs/03-业务模块/DC-数据清洗整理/00-工具C当前状态与开发指南.md
- docs/03-业务模块/DC-数据清洗整理/06-开发记录/2025-12-06_工具C_Day2开发完成总结.md

代码统计: ~1900行
测试结果: 7/7 通过 (100%)
云原生规范: 完全符合
 2025-12-06 22:12:47 +08:00
HaHafeng
d4d33528c7 feat(dc): Complete Phase 1 - Portal workbench page development 
Summary:
- Implement DC module Portal page with 3 tool cards
- Create ToolCard component with decorative background and hover animations
- Implement TaskList component with table layout and progress bars
- Implement AssetLibrary component with tab switching and file cards
- Complete database verification (4 tables confirmed)
- Complete backend API verification (6 endpoints ready)
- Optimize UI to match prototype design (V2.html)

Frontend Components (~715 lines):
- components/ToolCard.tsx - Tool cards with animations
- components/TaskList.tsx - Recent tasks table view
- components/AssetLibrary.tsx - Data asset library with tabs
- hooks/useRecentTasks.ts - Task state management
- hooks/useAssets.ts - Asset state management
- pages/Portal.tsx - Main portal page
- types/portal.ts - TypeScript type definitions

Backend Verification:
- Backend API: 1495 lines code verified
- Database: dc_schema with 4 tables verified
- API endpoints: 6 endpoints tested (templates API works)

Documentation:
- Database verification report
- Backend API test report
- Phase 1 completion summary
- UI optimization report
- Development task checklist
- Development plan for Tool B

Status: Phase 1 completed (100%), ready for browser testing
Next: Phase 2 - Tool B Step 1 and 2 development
 2025-12-02 21:53:24 +08:00
HaHafeng
88cc049fb3 feat(asl): Complete Day 5 - Fulltext Screening Backend API Development 
- Implement 5 core API endpoints (create task, get progress, get results, update decision, export Excel)
- Add FulltextScreeningController with Zod validation (652 lines)
- Implement ExcelExporter service with 4-sheet report generation (352 lines)
- Register routes under /api/v1/asl/fulltext-screening
- Create 31 REST Client test cases
- Add automated integration test script
- Fix PDF extraction fallback mechanism in LLM12FieldsService
- Update API design documentation to v3.0
- Update development plan to v1.2
- Create Day 5 development record
- Clean up temporary test files
 2025-11-23 10:52:07 +08:00
HaHafeng
3634933ece refactor(asl): ASL frontend architecture refactoring with left navigation 
- feat: Create ASLLayout component with 7-module left navigation
- feat: Implement Title Screening Settings page with optimized PICOS layout
- feat: Add placeholder pages for Workbench and Results
- fix: Fix nested routing structure for React Router v6
- fix: Resolve Spin component warning in MainLayout
- fix: Add QueryClientProvider to App.tsx
- style: Optimize PICOS form layout (P+I left, C+O+S right)
- style: Align Inclusion/Exclusion criteria side-by-side
- docs: Add architecture refactoring and routing fix reports

Ref: Week 2 Frontend Development
Scope: ASL module MVP - Title Abstract Screening
 2025-11-18 21:51:51 +08:00
HaHafeng
0c5310fb77 refactor(backend): incremental architecture evolution (Task 19) 
- Add common/ layer for shared capabilities (LLM, RAG, document, middleware)
- Add legacy/ layer for existing business code
- Move files to new structure (controllers, routes, services)
- Update index.ts for new route registration
- System remains fully functional
 2025-11-16 15:42:44 +08:00
AI Clinical Dev Team
348af7fee9 feat: add general chat feature (without project/agent concept) 2025-10-12 09:48:49 +08:00
AI Clinical Dev Team
8afff23995 docs: Day 12-13 completion summary and milestone update 2025-10-10 20:33:18 +08:00
AI Clinical Dev Team
b72167f73e feat: Day 8-9 - Project Management API completed 
Backend:
- Create project routes (GET, POST, PUT, DELETE)
- Implement projectController with CRUD operations
- Create projectService for database operations
- Add validation middleware for request validation
- Update Prisma schema (add background, researchType, deletedAt fields)
- Implement soft delete for projects

Frontend:
- Create projectApi service module
- Update useProjectStore with fetchProjects and loading state
- Connect ProjectSelector to real API with loading indicator
- Connect CreateProjectDialog to real API with error handling
- Connect EditProjectDialog to real API with loading state
- Add comprehensive error handling and user feedback

Build: Both frontend and backend build successfully
 2025-10-10 19:38:49 +08:00
AI Clinical Dev Team
39e14cfb97 feat(backend): Day 5 - backend basic architecture setup completed 2025-10-10 15:56:45 +08:00