docs(platform): Add database documentation system and restructure deployment docs
Completed: - Add 6 core database documents (docs/01-平台基础层/07-数据库/) Architecture overview, migration history, environment comparison, tech debt tracking, seed data management, PostgreSQL extensions - Restructure deployment docs: archive 20 legacy files to _archive-2025/ - Create unified daily operations manual (01-日常更新操作手册.md) - Add pending deployment change tracker (03-待部署变更清单.md) - Update database development standard to v3.0 (three iron rules) - Fix Prisma schema type drift: align @db.* annotations with actual DB IIT: UUID/Timestamptz(6), SSA: Timestamp(6)/VarChar(20/50/100) - Add migration: 20260227_align_schema_with_db_types (idempotent ALTER) - Add Cursor Rule for auto-reminding deployment change documentation - Update system status guide v6.4 with deployment and DB doc references - Add architecture consultation docs (Prisma guide, SAE deployment guide) Technical details: - Manual migration due to shadow DB limitation (TD-001 in tech debt) - Deployment docs reduced from 20+ scattered files to 3 core documents - Cursor Rule triggers on schema.prisma, package.json, Dockerfile changes Made-with: Cursor
This commit is contained in:
@@ -28,6 +28,10 @@ RUN npx prisma generate
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# 5. 复制本地已编译好的 dist 文件夹（跳过TypeScript编译）
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COPY dist ./dist
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# 5a. tsc 不会复制 .json 文件，手动补充 src 中的 JSON 配置到 dist
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COPY src/modules/ssa/config/*.json ./dist/modules/ssa/config/
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COPY src/modules/asl/fulltext-screening/prompts/*.json ./dist/modules/asl/fulltext-screening/prompts/
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# 6. 复制配置文件（agents.yaml等）
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COPY config ./config
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@@ -0,0 +1,27 @@
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-- ================================================================
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-- 对齐迁移：修正 prisma db push 造成的类型漂移
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-- 使 Schema 的 @db.* 注解与数据库实际类型一致
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-- 所有 ALTER 均为幂等操作（DB 已是目标类型，仅记录逻辑变更）
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-- 日期：2026-02-27
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-- ================================================================
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-- 1. ssa_workflows: 精度/长度对齐
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ALTER TABLE "ssa_schema"."ssa_workflows"
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ALTER COLUMN "status" SET DATA TYPE VARCHAR(20),
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ALTER COLUMN "created_at" SET DATA TYPE TIMESTAMP(6),
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ALTER COLUMN "started_at" SET DATA TYPE TIMESTAMP(6),
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ALTER COLUMN "completed_at" SET DATA TYPE TIMESTAMP(6);
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-- 2. ssa_workflow_steps: 精度/长度对齐
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ALTER TABLE "ssa_schema"."ssa_workflow_steps"
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ALTER COLUMN "tool_code" SET DATA TYPE VARCHAR(50),
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ALTER COLUMN "tool_name" SET DATA TYPE VARCHAR(100),
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ALTER COLUMN "status" SET DATA TYPE VARCHAR(20),
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ALTER COLUMN "started_at" SET DATA TYPE TIMESTAMP(6),
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ALTER COLUMN "completed_at" SET DATA TYPE TIMESTAMP(6);
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-- 3. 清理重复外键（prisma db push 用 fk_ 前缀创建了额外 FK）
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ALTER TABLE "ssa_schema"."ssa_workflow_steps"
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DROP CONSTRAINT IF EXISTS "fk_ssa_workflow_step_workflow";
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ALTER TABLE "ssa_schema"."ssa_workflows"
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DROP CONSTRAINT IF EXISTS "fk_ssa_workflow_session";
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@@ -0,0 +1,229 @@
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-- ================================================================
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-- 补丁迁移：覆盖 db push 创建的 6 张表 + 3 列
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-- 所有语句使用 IF NOT EXISTS 保证幂等（多次执行不报错）
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-- 日期：2026-02-27
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-- ================================================================
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-- ============ iit_schema: 4 张新表 + 1 列 + 1 索引 ============
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-- 1. IIT 字段元数据表（REDCap 字段定义缓存）
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CREATE TABLE IF NOT EXISTS "iit_schema"."field_metadata" (
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"id" TEXT NOT NULL,
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"project_id" TEXT NOT NULL,
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"field_name" TEXT NOT NULL,
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"field_label" TEXT NOT NULL,
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"field_type" TEXT NOT NULL,
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"form_name" TEXT NOT NULL,
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"section_header" TEXT,
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"validation" TEXT,
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"validation_min" TEXT,
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"validation_max" TEXT,
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"choices" TEXT,
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"required" BOOLEAN NOT NULL DEFAULT false,
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"branching" TEXT,
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"alias" TEXT,
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"rule_source" TEXT,
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"synced_at" TIMESTAMP(3) NOT NULL DEFAULT CURRENT_TIMESTAMP,
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CONSTRAINT "field_metadata_pkey" PRIMARY KEY ("id")
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);
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CREATE UNIQUE INDEX IF NOT EXISTS "unique_iit_field_metadata"
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ON "iit_schema"."field_metadata"("project_id", "field_name");
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CREATE INDEX IF NOT EXISTS "idx_iit_field_metadata_project"
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ON "iit_schema"."field_metadata"("project_id");
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CREATE INDEX IF NOT EXISTS "idx_iit_field_metadata_form"
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ON "iit_schema"."field_metadata"("project_id", "form_name");
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-- 2. IIT 质控日志表
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CREATE TABLE IF NOT EXISTS "iit_schema"."qc_logs" (
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"id" TEXT NOT NULL,
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"project_id" TEXT NOT NULL,
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"record_id" TEXT NOT NULL,
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"event_id" TEXT,
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"qc_type" TEXT NOT NULL,
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"form_name" TEXT,
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"status" TEXT NOT NULL,
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"issues" JSONB NOT NULL DEFAULT '[]',
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"rules_evaluated" INTEGER NOT NULL DEFAULT 0,
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"rules_skipped" INTEGER NOT NULL DEFAULT 0,
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"rules_passed" INTEGER NOT NULL DEFAULT 0,
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"rules_failed" INTEGER NOT NULL DEFAULT 0,
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"rule_version" TEXT NOT NULL,
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"inclusion_passed" BOOLEAN,
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"exclusion_passed" BOOLEAN,
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"triggered_by" TEXT NOT NULL,
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"created_at" TIMESTAMP(3) NOT NULL DEFAULT CURRENT_TIMESTAMP,
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CONSTRAINT "qc_logs_pkey" PRIMARY KEY ("id")
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);
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CREATE INDEX IF NOT EXISTS "idx_iit_qc_log_record_time"
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ON "iit_schema"."qc_logs"("project_id", "record_id", "created_at");
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CREATE INDEX IF NOT EXISTS "idx_iit_qc_log_status_time"
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ON "iit_schema"."qc_logs"("project_id", "status", "created_at");
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CREATE INDEX IF NOT EXISTS "idx_iit_qc_log_type_time"
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ON "iit_schema"."qc_logs"("project_id", "qc_type", "created_at");
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-- 3. IIT 受试者记录汇总表
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CREATE TABLE IF NOT EXISTS "iit_schema"."record_summary" (
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"id" TEXT NOT NULL,
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"project_id" TEXT NOT NULL,
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"record_id" TEXT NOT NULL,
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"enrolled_at" TIMESTAMP(3),
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"enrolled_by" TEXT,
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"last_updated_at" TIMESTAMP(3) NOT NULL,
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"last_updated_by" TEXT,
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"last_form_name" TEXT,
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"form_status" JSONB NOT NULL DEFAULT '{}',
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"total_forms" INTEGER NOT NULL DEFAULT 0,
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"completed_forms" INTEGER NOT NULL DEFAULT 0,
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"completion_rate" DOUBLE PRECISION NOT NULL DEFAULT 0,
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"latest_qc_status" TEXT,
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"latest_qc_at" TIMESTAMP(3),
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"update_count" INTEGER NOT NULL DEFAULT 0,
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"created_at" TIMESTAMP(3) NOT NULL DEFAULT CURRENT_TIMESTAMP,
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"updated_at" TIMESTAMP(3) NOT NULL,
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CONSTRAINT "record_summary_pkey" PRIMARY KEY ("id")
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);
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CREATE UNIQUE INDEX IF NOT EXISTS "unique_iit_record_summary"
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ON "iit_schema"."record_summary"("project_id", "record_id");
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CREATE INDEX IF NOT EXISTS "idx_iit_record_summary_enrolled"
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ON "iit_schema"."record_summary"("project_id", "enrolled_at");
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CREATE INDEX IF NOT EXISTS "idx_iit_record_summary_qc_status"
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ON "iit_schema"."record_summary"("project_id", "latest_qc_status");
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CREATE INDEX IF NOT EXISTS "idx_iit_record_summary_completion"
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ON "iit_schema"."record_summary"("project_id", "completion_rate");
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-- 4. IIT 项目级质控统计汇总表
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CREATE TABLE IF NOT EXISTS "iit_schema"."qc_project_stats" (
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"id" TEXT NOT NULL,
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"project_id" TEXT NOT NULL,
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"total_records" INTEGER NOT NULL DEFAULT 0,
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"passed_records" INTEGER NOT NULL DEFAULT 0,
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"failed_records" INTEGER NOT NULL DEFAULT 0,
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"warning_records" INTEGER NOT NULL DEFAULT 0,
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"inclusion_met" INTEGER NOT NULL DEFAULT 0,
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"exclusion_met" INTEGER NOT NULL DEFAULT 0,
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"avg_completion_rate" DOUBLE PRECISION NOT NULL DEFAULT 0,
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"updated_at" TIMESTAMP(3) NOT NULL,
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CONSTRAINT "qc_project_stats_pkey" PRIMARY KEY ("id")
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);
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CREATE UNIQUE INDEX IF NOT EXISTS "qc_project_stats_project_id_key"
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ON "iit_schema"."qc_project_stats"("project_id");
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-- 5. IIT projects 表新增 knowledge_base_id 列
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ALTER TABLE "iit_schema"."projects"
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ADD COLUMN IF NOT EXISTS "knowledge_base_id" TEXT;
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CREATE INDEX IF NOT EXISTS "idx_iit_project_kb"
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ON "iit_schema"."projects"("knowledge_base_id");
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-- ============ ssa_schema: 1 列 + 2 张新表 ============
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-- 6a. SSA Session 新增 data_profile 列（Phase 2A）
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ALTER TABLE "ssa_schema"."ssa_sessions"
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ADD COLUMN IF NOT EXISTS "data_profile" JSONB;
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-- 6. SSA 工作流表
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CREATE TABLE IF NOT EXISTS "ssa_schema"."ssa_workflows" (
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"id" TEXT NOT NULL DEFAULT gen_random_uuid()::text,
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"session_id" TEXT NOT NULL,
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"message_id" TEXT,
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"status" VARCHAR NOT NULL DEFAULT 'pending',
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"total_steps" INTEGER NOT NULL,
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"completed_steps" INTEGER NOT NULL DEFAULT 0,
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"workflow_plan" JSONB NOT NULL,
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"reasoning" TEXT,
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"created_at" TIMESTAMP(3) NOT NULL DEFAULT now(),
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"started_at" TIMESTAMP(3),
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"completed_at" TIMESTAMP(3),
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CONSTRAINT "ssa_workflows_pkey" PRIMARY KEY ("id")
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);
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CREATE INDEX IF NOT EXISTS "idx_ssa_workflow_session"
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ON "ssa_schema"."ssa_workflows"("session_id");
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CREATE INDEX IF NOT EXISTS "idx_ssa_workflow_status"
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ON "ssa_schema"."ssa_workflows"("status");
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-- 外键：ssa_workflows.session_id → ssa_sessions.id
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DO $$
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BEGIN
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IF NOT EXISTS (
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SELECT 1 FROM information_schema.table_constraints
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WHERE constraint_name = 'ssa_workflows_session_id_fkey'
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) THEN
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ALTER TABLE "ssa_schema"."ssa_workflows"
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ADD CONSTRAINT "ssa_workflows_session_id_fkey"
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FOREIGN KEY ("session_id")
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REFERENCES "ssa_schema"."ssa_sessions"("id")
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ON DELETE CASCADE ON UPDATE CASCADE;
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END IF;
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END $$;
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-- 7. SSA 工作流步骤表
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CREATE TABLE IF NOT EXISTS "ssa_schema"."ssa_workflow_steps" (
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"id" TEXT NOT NULL DEFAULT gen_random_uuid()::text,
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"workflow_id" TEXT NOT NULL,
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"step_order" INTEGER NOT NULL,
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"tool_code" VARCHAR NOT NULL,
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"tool_name" VARCHAR NOT NULL,
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"status" VARCHAR NOT NULL DEFAULT 'pending',
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"input_params" JSONB,
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"guardrail_checks" JSONB,
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"output_result" JSONB,
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"error_info" JSONB,
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"execution_ms" INTEGER,
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"started_at" TIMESTAMP(3),
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"completed_at" TIMESTAMP(3),
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CONSTRAINT "ssa_workflow_steps_pkey" PRIMARY KEY ("id")
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);
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CREATE INDEX IF NOT EXISTS "idx_ssa_workflow_step_workflow"
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ON "ssa_schema"."ssa_workflow_steps"("workflow_id");
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CREATE INDEX IF NOT EXISTS "idx_ssa_workflow_step_status"
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ON "ssa_schema"."ssa_workflow_steps"("status");
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-- 外键：ssa_workflow_steps.workflow_id → ssa_workflows.id
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DO $$
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BEGIN
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IF NOT EXISTS (
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SELECT 1 FROM information_schema.table_constraints
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WHERE constraint_name = 'ssa_workflow_steps_workflow_id_fkey'
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) THEN
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ALTER TABLE "ssa_schema"."ssa_workflow_steps"
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ADD CONSTRAINT "ssa_workflow_steps_workflow_id_fkey"
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FOREIGN KEY ("workflow_id")
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REFERENCES "ssa_schema"."ssa_workflows"("id")
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ON DELETE CASCADE ON UPDATE CASCADE;
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END IF;
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END $$;
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-- ============ rvw_schema: review_tasks 缺失列 ============
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-- 8. review_tasks 后续 prisma db push 新增的 8 个列
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ALTER TABLE "rvw_schema"."review_tasks"
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ADD COLUMN IF NOT EXISTS "selected_agents" TEXT[] DEFAULT ARRAY['editorial','methodology'];
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ALTER TABLE "rvw_schema"."review_tasks"
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ADD COLUMN IF NOT EXISTS "editorial_score" DOUBLE PRECISION;
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ALTER TABLE "rvw_schema"."review_tasks"
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ADD COLUMN IF NOT EXISTS "methodology_score" DOUBLE PRECISION;
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ALTER TABLE "rvw_schema"."review_tasks"
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ADD COLUMN IF NOT EXISTS "methodology_status" TEXT;
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ALTER TABLE "rvw_schema"."review_tasks"
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ADD COLUMN IF NOT EXISTS "pico_extract" JSONB;
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ALTER TABLE "rvw_schema"."review_tasks"
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ADD COLUMN IF NOT EXISTS "context_data" JSONB;
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ALTER TABLE "rvw_schema"."review_tasks"
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ADD COLUMN IF NOT EXISTS "is_archived" BOOLEAN DEFAULT false;
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ALTER TABLE "rvw_schema"."review_tasks"
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ADD COLUMN IF NOT EXISTS "archived_at" TIMESTAMP(3);
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CREATE INDEX IF NOT EXISTS "review_tasks_is_archived_idx"
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ON "rvw_schema"."review_tasks"("is_archived");
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@@ -1430,7 +1430,8 @@ model IitQcProjectStats {
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/// eQuery 表 - AI 自动生成的电子质疑，具有完整生命周期
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model IitEquery {
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id String @id @default(uuid())
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// TODO: Tech Debt - DB 由 prisma db push 创建为 UUID 类型，未来大版本重构时统一为 String/TEXT
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id String @id @default(dbgenerated("gen_random_uuid()")) @db.Uuid
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projectId String @map("project_id")
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// 来源
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@@ -1452,23 +1453,24 @@ model IitEquery {
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// CRC 回复
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assignedTo String? @map("assigned_to")
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respondedAt DateTime? @map("responded_at")
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// TODO: Tech Debt - DB 由 prisma db push 创建为 TIMESTAMPTZ(6)，与 Prisma 默认的 TIMESTAMP(3) 不同
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respondedAt DateTime? @map("responded_at") @db.Timestamptz(6)
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responseText String? @map("response_text") @db.Text
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responseData Json? @map("response_data") @db.JsonB
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// AI 复核
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reviewResult String? @map("review_result")
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reviewNote String? @map("review_note") @db.Text
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reviewedAt DateTime? @map("reviewed_at")
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reviewedAt DateTime? @map("reviewed_at") @db.Timestamptz(6)
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// 关闭
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closedAt DateTime? @map("closed_at")
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closedAt DateTime? @map("closed_at") @db.Timestamptz(6)
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closedBy String? @map("closed_by")
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resolution String? @db.Text
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// 时间线
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createdAt DateTime @default(now()) @map("created_at")
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updatedAt DateTime @updatedAt @map("updated_at")
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||||
createdAt DateTime @default(now()) @map("created_at") @db.Timestamptz(6)
|
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updatedAt DateTime @default(now()) @updatedAt @map("updated_at") @db.Timestamptz(6)
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@@index([projectId], map: "idx_iit_equery_project")
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@@index([projectId, status], map: "idx_iit_equery_project_status")
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@@ -1480,7 +1482,8 @@ model IitEquery {
|
||||
|
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/// 重大事件归档表 - SAE、重大方案偏离等长期临床资产
|
||||
model IitCriticalEvent {
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||||
id String @id @default(uuid())
|
||||
// TODO: Tech Debt - DB 由 prisma db push 创建为 UUID 类型，未来大版本重构时统一为 String/TEXT
|
||||
id String @id @default(dbgenerated("gen_random_uuid()")) @db.Uuid
|
||||
projectId String @map("project_id")
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||||
recordId String @map("record_id")
|
||||
|
||||
@@ -1491,7 +1494,8 @@ model IitCriticalEvent {
|
||||
// 事件内容
|
||||
title String
|
||||
description String @db.Text
|
||||
detectedAt DateTime @map("detected_at")
|
||||
// TODO: Tech Debt - DB 由 prisma db push 创建为 TIMESTAMPTZ(6)
|
||||
detectedAt DateTime @map("detected_at") @db.Timestamptz(6)
|
||||
detectedBy String @default("ai") @map("detected_by")
|
||||
|
||||
// 来源追溯
|
||||
@@ -1502,15 +1506,15 @@ model IitCriticalEvent {
|
||||
// 处理状态
|
||||
status String @default("open")
|
||||
handledBy String? @map("handled_by")
|
||||
handledAt DateTime? @map("handled_at")
|
||||
handledAt DateTime? @map("handled_at") @db.Timestamptz(6)
|
||||
handlingNote String? @map("handling_note") @db.Text
|
||||
|
||||
// 上报追踪
|
||||
reportedToEc Boolean @default(false) @map("reported_to_ec")
|
||||
reportedAt DateTime? @map("reported_at")
|
||||
reportedAt DateTime? @map("reported_at") @db.Timestamptz(6)
|
||||
|
||||
createdAt DateTime @default(now()) @map("created_at")
|
||||
updatedAt DateTime @updatedAt @map("updated_at")
|
||||
createdAt DateTime @default(now()) @map("created_at") @db.Timestamptz(6)
|
||||
updatedAt DateTime @default(now()) @updatedAt @map("updated_at") @db.Timestamptz(6)
|
||||
|
||||
@@index([projectId], map: "idx_iit_critical_event_project")
|
||||
@@index([projectId, eventType], map: "idx_iit_critical_event_type")
|
||||
@@ -2513,17 +2517,18 @@ model SsaInterpretation {
|
||||
|
||||
/// SSA 多步骤流程
|
||||
model SsaWorkflow {
|
||||
id String @id @default(uuid())
|
||||
// TODO: Tech Debt - DB 由 prisma db push 创建，类型与 Prisma 默认不同，已手动对齐
|
||||
id String @id @default(dbgenerated("(gen_random_uuid())::text"))
|
||||
sessionId String @map("session_id")
|
||||
messageId String? @map("message_id") /// 关联的计划消息
|
||||
status String @default("pending") /// pending | running | completed | partial | error
|
||||
status String @default("pending") @db.VarChar(20) /// pending | running | completed | partial | error
|
||||
totalSteps Int @map("total_steps")
|
||||
completedSteps Int @default(0) @map("completed_steps")
|
||||
workflowPlan Json @map("workflow_plan") /// 原始计划 JSON
|
||||
reasoning String? @db.Text /// LLM 规划理由
|
||||
createdAt DateTime @default(now()) @map("created_at")
|
||||
startedAt DateTime? @map("started_at")
|
||||
completedAt DateTime? @map("completed_at")
|
||||
createdAt DateTime @default(now()) @map("created_at") @db.Timestamp(6)
|
||||
startedAt DateTime? @map("started_at") @db.Timestamp(6)
|
||||
completedAt DateTime? @map("completed_at") @db.Timestamp(6)
|
||||
|
||||
session SsaSession @relation(fields: [sessionId], references: [id], onDelete: Cascade)
|
||||
steps SsaWorkflowStep[]
|
||||
@@ -2536,19 +2541,20 @@ model SsaWorkflow {
|
||||
|
||||
/// SSA 流程步骤
|
||||
model SsaWorkflowStep {
|
||||
id String @id @default(uuid())
|
||||
// TODO: Tech Debt - DB 由 prisma db push 创建，类型与 Prisma 默认不同，已手动对齐
|
||||
id String @id @default(dbgenerated("(gen_random_uuid())::text"))
|
||||
workflowId String @map("workflow_id")
|
||||
stepOrder Int @map("step_order") /// 步骤顺序（1, 2, 3...）
|
||||
toolCode String @map("tool_code")
|
||||
toolName String @map("tool_name")
|
||||
status String @default("pending") /// pending | running | success | warning | error | skipped
|
||||
toolCode String @map("tool_code") @db.VarChar(50)
|
||||
toolName String @map("tool_name") @db.VarChar(100)
|
||||
status String @default("pending") @db.VarChar(20) /// pending | running | success | warning | error | skipped
|
||||
inputParams Json? @map("input_params") /// 输入参数
|
||||
guardrailChecks Json? @map("guardrail_checks") /// JIT 护栏检验结果
|
||||
outputResult Json? @map("output_result") /// 执行结果
|
||||
errorInfo Json? @map("error_info") /// 错误信息
|
||||
executionMs Int? @map("execution_ms") /// 执行耗时（毫秒）
|
||||
startedAt DateTime? @map("started_at")
|
||||
completedAt DateTime? @map("completed_at")
|
||||
startedAt DateTime? @map("started_at") @db.Timestamp(6)
|
||||
completedAt DateTime? @map("completed_at") @db.Timestamp(6)
|
||||
|
||||
workflow SsaWorkflow @relation(fields: [workflowId], references: [id], onDelete: Cascade)
|
||||
|
||||
|
||||
Reference in New Issue
Block a user