refactor(asl): ASL frontend architecture refactoring with left navigation
- feat: Create ASLLayout component with 7-module left navigation - feat: Implement Title Screening Settings page with optimized PICOS layout - feat: Add placeholder pages for Workbench and Results - fix: Fix nested routing structure for React Router v6 - fix: Resolve Spin component warning in MainLayout - fix: Add QueryClientProvider to App.tsx - style: Optimize PICOS form layout (P+I left, C+O+S right) - style: Align Inclusion/Exclusion criteria side-by-side - docs: Add architecture refactoring and routing fix reports Ref: Week 2 Frontend Development Scope: ASL module MVP - Title Abstract Screening
This commit is contained in:
258
backend/src/modules/asl/controllers/literatureController.ts
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258
backend/src/modules/asl/controllers/literatureController.ts
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/**
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* ASL 文献控制器
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*/
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import { FastifyRequest, FastifyReply } from 'fastify';
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import { ImportLiteratureDto, LiteratureDto } from '../types/index.js';
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import { prisma } from '../../../config/database.js';
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import { logger } from '../../../common/logging/index.js';
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import * as XLSX from 'xlsx';
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/**
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* 导入文献（从Excel或JSON）
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*/
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export async function importLiteratures(
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request: FastifyRequest<{ Body: ImportLiteratureDto }>,
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reply: FastifyReply
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) {
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try {
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const userId = (request as any).userId || 'asl-test-user-001';
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const { projectId, literatures } = request.body;
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// 验证项目归属
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const project = await prisma.aslScreeningProject.findFirst({
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where: { id: projectId, userId },
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});
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if (!project) {
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return reply.status(404).send({
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error: 'Project not found',
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});
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}
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// 批量创建文献
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const created = await prisma.aslLiterature.createMany({
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data: literatures.map((lit) => ({
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projectId,
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pmid: lit.pmid,
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title: lit.title,
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abstract: lit.abstract,
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authors: lit.authors,
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journal: lit.journal,
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publicationYear: lit.publicationYear,
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doi: lit.doi,
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})),
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skipDuplicates: true, // 跳过重复的PMID
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});
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logger.info('Literatures imported', {
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projectId,
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count: created.count,
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});
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return reply.status(201).send({
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success: true,
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data: {
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importedCount: created.count,
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},
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});
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} catch (error) {
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logger.error('Failed to import literatures', { error });
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return reply.status(500).send({
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error: 'Failed to import literatures',
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});
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}
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}
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/**
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* 从Excel文件导入文献
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*/
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export async function importLiteraturesFromExcel(
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request: FastifyRequest,
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reply: FastifyReply
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) {
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try {
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const userId = (request as any).userId || 'asl-test-user-001';
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// 获取上传的文件
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const data = await request.file();
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if (!data) {
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return reply.status(400).send({
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error: 'No file uploaded',
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});
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}
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const projectId = (request.body as any).projectId;
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if (!projectId) {
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return reply.status(400).send({
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error: 'projectId is required',
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});
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}
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// 验证项目归属
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const project = await prisma.aslScreeningProject.findFirst({
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where: { id: projectId, userId },
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});
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if (!project) {
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return reply.status(404).send({
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error: 'Project not found',
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});
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}
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// 解析Excel（内存中）
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const buffer = await data.toBuffer();
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const workbook = XLSX.read(buffer, { type: 'buffer' });
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const sheetName = workbook.SheetNames[0];
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const sheet = workbook.Sheets[sheetName];
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const jsonData = XLSX.utils.sheet_to_json<any>(sheet);
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// 映射字段（支持中英文列名）
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const literatures: LiteratureDto[] = jsonData.map((row) => ({
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pmid: row.PMID || row.pmid || row['PMID编号'],
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title: row.Title || row.title || row['标题'],
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abstract: row.Abstract || row.abstract || row['摘要'],
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authors: row.Authors || row.authors || row['作者'],
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journal: row.Journal || row.journal || row['期刊'],
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publicationYear: row.Year || row.year || row['年份'],
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doi: row.DOI || row.doi,
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}));
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// 批量创建
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const created = await prisma.aslLiterature.createMany({
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data: literatures.map((lit) => ({
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projectId,
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...lit,
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})),
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skipDuplicates: true,
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});
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logger.info('Literatures imported from Excel', {
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projectId,
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count: created.count,
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});
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return reply.status(201).send({
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success: true,
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data: {
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importedCount: created.count,
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totalRows: jsonData.length,
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},
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});
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} catch (error) {
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logger.error('Failed to import literatures from Excel', { error });
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return reply.status(500).send({
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error: 'Failed to import literatures from Excel',
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});
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}
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}
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/**
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* 获取项目的所有文献
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*/
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export async function getLiteratures(
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request: FastifyRequest<{
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Params: { projectId: string };
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Querystring: { page?: number; limit?: number };
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}>,
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reply: FastifyReply
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) {
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try {
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const userId = (request as any).userId || 'asl-test-user-001';
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const { projectId } = request.params;
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const { page = 1, limit = 50 } = request.query;
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// 验证项目归属
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const project = await prisma.aslScreeningProject.findFirst({
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where: { id: projectId, userId },
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});
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if (!project) {
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return reply.status(404).send({
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error: 'Project not found',
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});
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}
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const [literatures, total] = await Promise.all([
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prisma.aslLiterature.findMany({
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where: { projectId },
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skip: (page - 1) * limit,
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take: limit,
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orderBy: { createdAt: 'desc' },
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include: {
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screeningResults: {
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select: {
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conflictStatus: true,
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finalDecision: true,
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},
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},
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},
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}),
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prisma.aslLiterature.count({
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where: { projectId },
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}),
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]);
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return reply.send({
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success: true,
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data: {
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literatures,
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pagination: {
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page,
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limit,
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total,
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totalPages: Math.ceil(total / limit),
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},
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},
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});
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} catch (error) {
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logger.error('Failed to get literatures', { error });
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return reply.status(500).send({
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error: 'Failed to get literatures',
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});
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}
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}
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/**
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* 删除文献
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*/
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export async function deleteLiterature(
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request: FastifyRequest<{ Params: { literatureId: string } }>,
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reply: FastifyReply
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) {
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try {
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const userId = (request as any).userId || 'asl-test-user-001';
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const { literatureId } = request.params;
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// 验证文献归属
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const literature = await prisma.aslLiterature.findFirst({
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where: {
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id: literatureId,
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project: { userId },
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},
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});
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if (!literature) {
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return reply.status(404).send({
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error: 'Literature not found',
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});
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}
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await prisma.aslLiterature.delete({
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where: { id: literatureId },
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});
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logger.info('Literature deleted', { literatureId });
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return reply.send({
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success: true,
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message: 'Literature deleted successfully',
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});
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} catch (error) {
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logger.error('Failed to delete literature', { error });
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return reply.status(500).send({
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error: 'Failed to delete literature',
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});
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}
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}
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224
backend/src/modules/asl/controllers/projectController.ts
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224
backend/src/modules/asl/controllers/projectController.ts
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@@ -0,0 +1,224 @@
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/**
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* ASL 筛选项目控制器
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*/
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import { FastifyRequest, FastifyReply } from 'fastify';
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import { CreateScreeningProjectDto } from '../types/index.js';
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import { prisma } from '../../../config/database.js';
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import { logger } from '../../../common/logging/index.js';
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/**
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* 创建筛选项目
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*/
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export async function createProject(
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request: FastifyRequest<{ Body: CreateScreeningProjectDto & { userId?: string } }>,
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reply: FastifyReply
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) {
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try {
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// 临时测试模式：优先从JWT获取，否则从请求体获取
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const userId = (request as any).userId || (request.body as any).userId || 'asl-test-user-001';
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const { projectName, picoCriteria, inclusionCriteria, exclusionCriteria, screeningConfig } = request.body;
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// 验证必填字段
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if (!projectName || !picoCriteria || !inclusionCriteria || !exclusionCriteria) {
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return reply.status(400).send({
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error: 'Missing required fields',
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});
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}
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// 创建项目
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const project = await prisma.aslScreeningProject.create({
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data: {
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userId,
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projectName,
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picoCriteria,
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inclusionCriteria,
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exclusionCriteria,
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screeningConfig: screeningConfig || {
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models: ['deepseek-chat', 'qwen-max'],
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temperature: 0,
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},
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status: 'draft',
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},
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});
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logger.info('ASL screening project created', {
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projectId: project.id,
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userId,
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projectName,
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});
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return reply.status(201).send({
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success: true,
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data: project,
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});
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} catch (error) {
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logger.error('Failed to create ASL project', { error });
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return reply.status(500).send({
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error: 'Failed to create project',
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});
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}
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}
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/**
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* 获取用户的所有筛选项目
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*/
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export async function getProjects(request: FastifyRequest, reply: FastifyReply) {
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try {
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const userId = (request as any).userId || 'asl-test-user-001';
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const projects = await prisma.aslScreeningProject.findMany({
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where: { userId },
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orderBy: { createdAt: 'desc' },
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include: {
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_count: {
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select: {
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literatures: true,
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screeningResults: true,
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},
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},
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},
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});
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return reply.send({
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success: true,
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data: projects,
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});
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} catch (error) {
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logger.error('Failed to get ASL projects', { error });
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return reply.status(500).send({
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error: 'Failed to get projects',
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});
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}
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}
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/**
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* 获取单个项目详情
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*/
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export async function getProjectById(
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request: FastifyRequest<{ Params: { projectId: string } }>,
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reply: FastifyReply
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) {
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try {
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const userId = (request as any).userId || 'asl-test-user-001';
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const { projectId } = request.params;
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const project = await prisma.aslScreeningProject.findFirst({
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where: {
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id: projectId,
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userId,
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},
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include: {
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_count: {
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select: {
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literatures: true,
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screeningResults: true,
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screeningTasks: true,
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},
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},
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},
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});
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if (!project) {
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return reply.status(404).send({
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error: 'Project not found',
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});
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}
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return reply.send({
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success: true,
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data: project,
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});
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} catch (error) {
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logger.error('Failed to get ASL project', { error });
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return reply.status(500).send({
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error: 'Failed to get project',
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});
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}
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}
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/**
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* 更新项目
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*/
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export async function updateProject(
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request: FastifyRequest<{
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Params: { projectId: string };
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Body: Partial<CreateScreeningProjectDto>;
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}>,
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reply: FastifyReply
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) {
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try {
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const userId = (request as any).userId || 'asl-test-user-001';
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const { projectId } = request.params;
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const updateData = request.body;
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// 验证项目归属
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const existingProject = await prisma.aslScreeningProject.findFirst({
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where: { id: projectId, userId },
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});
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if (!existingProject) {
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return reply.status(404).send({
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error: 'Project not found',
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});
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}
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const project = await prisma.aslScreeningProject.update({
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where: { id: projectId },
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data: updateData,
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});
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logger.info('ASL project updated', { projectId, userId });
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return reply.send({
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success: true,
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data: project,
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});
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} catch (error) {
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logger.error('Failed to update ASL project', { error });
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return reply.status(500).send({
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error: 'Failed to update project',
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});
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}
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}
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/**
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* 删除项目
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*/
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export async function deleteProject(
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request: FastifyRequest<{ Params: { projectId: string } }>,
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reply: FastifyReply
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) {
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try {
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const userId = (request as any).userId || 'asl-test-user-001';
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const { projectId } = request.params;
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// 验证项目归属
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const existingProject = await prisma.aslScreeningProject.findFirst({
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where: { id: projectId, userId },
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});
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if (!existingProject) {
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return reply.status(404).send({
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error: 'Project not found',
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});
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}
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await prisma.aslScreeningProject.delete({
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where: { id: projectId },
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});
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logger.info('ASL project deleted', { projectId, userId });
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return reply.send({
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success: true,
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message: 'Project deleted successfully',
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});
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} catch (error) {
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logger.error('Failed to delete ASL project', { error });
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return reply.status(500).send({
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error: 'Failed to delete project',
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});
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}
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}
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Block a user